Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq894 147 3e-30
seq945 141 1e-28
seq1757 131 2e-25
seq772 127 3e-24
seq1163 86.0 8e-12
seq1432 84.2 3e-11
seq778 84.2 3e-11
>seq894
Length=3336090
Score = 147 bits (162), Expect = 3e-30
Identities = 251/361 (70%), Gaps = 10/361 (3%)
Strand=Plus/Plus
Query 11537 TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT 11596
||||| ||||||||||| || || | ||||||| || |||||||| |||||||| ||
Sbjct 2654831 TCAAAACCATCCATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 2654890
Query 11597 GGCATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653
|||| |||| | | |||| | || || ||||| || ||||| | ||| |||
Sbjct 2654891 CC---ACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACA 2654947
Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713
|| ||||| |||||| ||| ||| || |||||||| || ||| |||||| |||
Sbjct 2654948 ATGCATGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACTCTTGAGGCACCAACA 2655007
Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGG--ATGAATGGGACATTTGATT 11771
|| ||||||||||| ||||| | | | ||| ||| | ||| || ||| | ||
Sbjct 2655008 CCGACAAACATCTCAACAAACTCAGAACCCGAG--ATGGAAAAGAAGGGCACACCGGCTT 2655065
Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGG 11831
|||| || |||||| || || ||||| || || ||||| || ||| | || ||
Sbjct 2655066 CACCAGCAATGGCTTTTGCCAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAA 2655125
Query 11832 CGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCA 11891
| ||| ||||||| ||||||| | || | ||||| || | ||| ||||| ||||
Sbjct 2655126 CACCTTTGGGGATCCGGGCACCAACTGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCA 2655185
Query 11892 C 11892
|
Sbjct 2655186 C 2655186
>seq945
Length=941802
Score = 141 bits (156), Expect = 1e-28
Identities = 202/280 (72%), Gaps = 6/280 (2%)
Strand=Plus/Plus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| ||||||||||| || | || |||||||| || |||||||||||||||||| ||
Sbjct 882099 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCATCATTTCCT-- 882156
Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656
| | ||| ||||| | | ||| | || || || ||||||||||||||||| ||||||
Sbjct 882157 CCTCCCATCCCAGCTCCTCTCTGCCTCCCAACAGCGTCAATCTCATCAATGAATACAATA 882216
Query 11657 CATGGTTGATTTTCGCGG-GCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715
|| ||| | ||| | || | || || | ||| | ||| || |||||||||||
Sbjct 882217 CAAGGT-GCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACACC 882275
Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775
|||||| | ||||||||| | || ||| | ||| || ||| || || || || ||
Sbjct 882276 AACAAAAAGCTCCACAAACTCTGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCCTCCCC 882335
Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815
|| | || | || ||||| ||||| |||||||| |||
Sbjct 882336 AGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGC 882375
>seq1757
Length=376612
Score = 131 bits (144), Expect = 2e-25
Identities = 278/414 (67%), Gaps = 6/414 (1%)
Strand=Plus/Minus
Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541
|||||| || || | | ||| || || |||| || | || ||||| | | |||||
Sbjct 158882 ATCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAA 158823
Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601
||||||||||| || || | ||||| | || |||||||| |||||||| ||
Sbjct 158822 ACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCTCC--- 158766
Query 11602 ACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658
|||| || | | | |||| | || || ||||| || ||||| | |||||||| ||
Sbjct 158765 ACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACAATGCA 158706
Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718
|| || || ||| | | || ||||| || || ||| |||||| ||||| ||
Sbjct 158705 AGGAGCGTTCTCCTTGGCTTTCTTGAAAAGATCACGGACTCTTGAGGCACCAACACCGAC 158646
Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778
||||||||| ||||| | | ||||| || ||| || ||| | |||||| ||
Sbjct 158645 AAACATCTCAACAAACTCAGAACCAGAGATGGAGAAGAAAGGCACACCAGCTTCACCAGC 158586
Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838
|||||| || | ||||| || || ||||| || ||| || || | |||
Sbjct 158585 AATGGCTTTTGCCAAAAGGGTTTTCCCAGTACCAGGGGGACCAATAAGGAGAACACCTTT 158526
Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892
|| |||||||||||| || |||||||||||| ||| ||||| |||||
Sbjct 158525 CGGAATCTTGGCACCAACCGCAGTGAATCTCTCGGGTTTCTTCAGAAACTCCAC 158472
>seq772
Length=329654
Score = 127 bits (140), Expect = 3e-24
Identities = 199/282 (71%), Gaps = 12/282 (4%)
Strand=Plus/Minus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| ||||||||||| || | | |||||||| || |||||||||||||||||| |
Sbjct 253388 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 253331
Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656
| ||| ||||| | | |||| | ||||| ||||||||||||||||| || ||||||
Sbjct 253330 CCACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACACAATA 253271
Query 11657 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712
|| || || |||| || | ||||| | ||| | ||| || ||||||||
Sbjct 253270 CAAGGAGCTTTCGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCCAC 253215
Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772
||||||||| | ||||||||| | | |||| ||| | ||| || || || |||
Sbjct 253214 ACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCTGCTTC 253155
Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814
|| || | |||| || | || ||||| |||||||| ||
Sbjct 253154 TCCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGG 253113
>seq1163
Length=414626
Score = 86.0 bits (94), Expect = 8e-12
Identities = 163/237 (69%), Gaps = 5/237 (2%)
Strand=Plus/Plus
Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000
|| || ||||| || || ||||||||||| | || | ||| ||| |||||| | ||
Sbjct 27072 TGAGGCCTTGGAGTTCCTGCATTGAAGAGAATAGGAGATGCATGAGTGAACAATCTCTGA 27131
Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060
|||||| | ||| || | | |||||||||| |||||| ||| ||||| | |
Sbjct 27132 GACATCAAATGGTAAGTTTTGATTGCAGAATCAATATCTTCCATGTGAATGCCAACAGAA 27191
Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118
|| | ||||| ||||| || || |||| | | | |||| || | || |||| |
Sbjct 27192 ACTCTCATGAGCATGTGTTGAGGCCTTTCAACAACTTTCCCATGGA--CTTTCAAGAGGT 27249
Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCGCTTCGTAT 112175
| | ||||||| ||||| | ||||||||| || ||||| | || || ||||||
Sbjct 27250 ACAACCTCTCAAGTGTTTTAAATCCAAAGTAATCATAATCAAAATCACG-GTCGTAT 27305
>seq1432
Length=495105
Score = 84.2 bits (92), Expect = 3e-11
Identities = 152/222 (68%), Gaps = 3/222 (1%)
Strand=Plus/Minus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
||| ||||| || |||| ||||| | ||| || ||||| || || ||||| | |||
Sbjct 66059 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACC 66000
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|| ||||||||||| | || | || || || |||||||| ||||| || || ||
Sbjct 65999 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCA 65940
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849
||||| || | | | || |||||| |||| | | | | ||||||||||||
Sbjct 65939 AGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGA---TCCGTTGATCCATTTCATTGC 65883
Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891
||||| || |||||| | ||| || | |||| ||| ||
Sbjct 65882 CCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGC 65841
>seq778
Length=452071
Score = 84.2 bits (92), Expect = 3e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 111044 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 111103
|||||| |||| || |||||||| ||||| | ||||||||||||||||||||| || ||
Sbjct 424440 ATAAATGCATCTGCAAGACCTTGTACACCGATACCAATAGGTCTGTGTCGCATGTTTGAA 424381
Query 111104 TTTCGCGCAGTCTCAACGGGATAAAAATT 111132
|| |||||||| || ||||| ||||
Sbjct 424380 GTTTTTGCAGTCTCCACAGGATAGTAATT 424352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628014422954400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |