Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq894 147 3e-30 seq945 141 1e-28 seq1757 131 2e-25 seq772 127 3e-24 seq1163 86.0 8e-12 seq1432 84.2 3e-11 seq778 84.2 3e-11 >seq894 Length=3336090 Score = 147 bits (162), Expect = 3e-30 Identities = 251/361 (70%), Gaps = 10/361 (3%) Strand=Plus/Plus Query 11537 TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT 11596 ||||| ||||||||||| || || | ||||||| || |||||||| |||||||| || Sbjct 2654831 TCAAAACCATCCATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 2654890 Query 11597 GGCATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 |||| |||| | | |||| | || || ||||| || ||||| | ||| ||| Sbjct 2654891 CC---ACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACA 2654947 Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 || ||||| |||||| ||| ||| || |||||||| || ||| |||||| ||| Sbjct 2654948 ATGCATGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACTCTTGAGGCACCAACA 2655007 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGG--ATGAATGGGACATTTGATT 11771 || ||||||||||| ||||| | | | ||| ||| | ||| || ||| | || Sbjct 2655008 CCGACAAACATCTCAACAAACTCAGAACCCGAG--ATGGAAAAGAAGGGCACACCGGCTT 2655065 Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGG 11831 |||| || |||||| || || ||||| || || ||||| || ||| | || || Sbjct 2655066 CACCAGCAATGGCTTTTGCCAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAA 2655125 Query 11832 CGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCA 11891 | ||| ||||||| ||||||| | || | ||||| || | ||| ||||| |||| Sbjct 2655126 CACCTTTGGGGATCCGGGCACCAACTGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCA 2655185 Query 11892 C 11892 | Sbjct 2655186 C 2655186 >seq945 Length=941802 Score = 141 bits (156), Expect = 1e-28 Identities = 202/280 (72%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || |||||||| || |||||||||||||||||| || Sbjct 882099 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCATCATTTCCT-- 882156 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | ||| | || || || ||||||||||||||||| |||||| Sbjct 882157 CCTCCCATCCCAGCTCCTCTCTGCCTCCCAACAGCGTCAATCTCATCAATGAATACAATA 882216 Query 11657 CATGGTTGATTTTCGCGG-GCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || ||| | ||| | || | || || | ||| | ||| || ||||||||||| Sbjct 882217 CAAGGT-GCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACACC 882275 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 |||||| | ||||||||| | || ||| | ||| || ||| || || || || || Sbjct 882276 AACAAAAAGCTCCACAAACTCTGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCCTCCCC 882335 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 || | || | || ||||| ||||| |||||||| ||| Sbjct 882336 AGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGC 882375 >seq1757 Length=376612 Score = 131 bits (144), Expect = 2e-25 Identities = 278/414 (67%), Gaps = 6/414 (1%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| || || | | ||| || || |||| || | || ||||| | | ||||| Sbjct 158882 ATCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAA 158823 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 ||||||||||| || || | ||||| | || |||||||| |||||||| || Sbjct 158822 ACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCTCC--- 158766 Query 11602 ACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 |||| || | | | |||| | || || ||||| || ||||| | |||||||| || Sbjct 158765 ACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACAATGCA 158706 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || || || ||| | | || ||||| || || ||| |||||| ||||| || Sbjct 158705 AGGAGCGTTCTCCTTGGCTTTCTTGAAAAGATCACGGACTCTTGAGGCACCAACACCGAC 158646 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 ||||||||| ||||| | | ||||| || ||| || ||| | |||||| || Sbjct 158645 AAACATCTCAACAAACTCAGAACCAGAGATGGAGAAGAAAGGCACACCAGCTTCACCAGC 158586 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 |||||| || | ||||| || || ||||| || ||| || || | ||| Sbjct 158585 AATGGCTTTTGCCAAAAGGGTTTTCCCAGTACCAGGGGGACCAATAAGGAGAACACCTTT 158526 Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 || |||||||||||| || |||||||||||| ||| ||||| ||||| Sbjct 158525 CGGAATCTTGGCACCAACCGCAGTGAATCTCTCGGGTTTCTTCAGAAACTCCAC 158472 >seq772 Length=329654 Score = 127 bits (140), Expect = 3e-24 Identities = 199/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || |||||||||||||||||| | Sbjct 253388 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 253331 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | ||| ||||| | | |||| | ||||| ||||||||||||||||| || |||||| Sbjct 253330 CCACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACACAATA 253271 Query 11657 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 || || || |||| || | ||||| | ||| | ||| || |||||||| Sbjct 253270 CAAGGAGCTTTCGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCCAC 253215 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772 ||||||||| | ||||||||| | | |||| ||| | ||| || || || ||| Sbjct 253214 ACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCTGCTTC 253155 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || | |||| || | || ||||| |||||||| || Sbjct 253154 TCCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGG 253113 >seq1163 Length=414626 Score = 86.0 bits (94), Expect = 8e-12 Identities = 163/237 (69%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || || ||||||||||| | || | ||| ||| |||||| | || Sbjct 27072 TGAGGCCTTGGAGTTCCTGCATTGAAGAGAATAGGAGATGCATGAGTGAACAATCTCTGA 27131 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | ||| || | | |||||||||| |||||| ||| ||||| | | Sbjct 27132 GACATCAAATGGTAAGTTTTGATTGCAGAATCAATATCTTCCATGTGAATGCCAACAGAA 27191 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118 || | ||||| ||||| || || |||| | | | |||| || | || |||| | Sbjct 27192 ACTCTCATGAGCATGTGTTGAGGCCTTTCAACAACTTTCCCATGGA--CTTTCAAGAGGT 27249 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCGCTTCGTAT 112175 | | ||||||| ||||| | ||||||||| || ||||| | || || |||||| Sbjct 27250 ACAACCTCTCAAGTGTTTTAAATCCAAAGTAATCATAATCAAAATCACG-GTCGTAT 27305 >seq1432 Length=495105 Score = 84.2 bits (92), Expect = 3e-11 Identities = 152/222 (68%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| ||||| || |||| ||||| | ||| || ||||| || || ||||| | ||| Sbjct 66059 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACC 66000 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || ||||||||||| | || | || || || |||||||| ||||| || || || Sbjct 65999 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCA 65940 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 ||||| || | | | || |||||| |||| | | | | |||||||||||| Sbjct 65939 AGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGA---TCCGTTGATCCATTTCATTGC 65883 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||||| || |||||| | ||| || | |||| ||| || Sbjct 65882 CCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGC 65841 >seq778 Length=452071 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 111044 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 111103 |||||| |||| || |||||||| ||||| | ||||||||||||||||||||| || || Sbjct 424440 ATAAATGCATCTGCAAGACCTTGTACACCGATACCAATAGGTCTGTGTCGCATGTTTGAA 424381 Query 111104 TTTCGCGCAGTCTCAACGGGATAAAAATT 111132 || |||||||| || ||||| |||| Sbjct 424380 GTTTTTGCAGTCTCCACAGGATAGTAATT 424352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628014422954400