Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq894 125 9e-24 seq1432 87.8 2e-12 seq772 86.0 8e-12 seq866 84.2 3e-11 >seq894 Length=3336090 Score = 125 bits (138), Expect = 9e-24 Identities = 276/407 (68%), Gaps = 10/407 (2%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| |||||||||||||||| ||| ||||| | ||| ||||| | ||||||||| | Sbjct 2654831 TCAAAACCATCCATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 2654890 Query 14210 GGCATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 |||| || | | | |||| |||| || || || |||||||| | |||||| Sbjct 2654891 CC---ACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACA 2654947 Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326 || ||||| |||||| ||| || || | ||| || ||||| |||||| ||| Sbjct 2654948 ATGCATGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACTCTTGAGGCACCAACA 2655007 Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTC 14385 || ||||||||||| ||||| | | | | | || | | |||||| || | ||| Sbjct 2655008 CCGACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGCACACCGGCTTC 2655066 Query 14386 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGC 14445 ||| || |||||| || || ||||| ||||| || || || || | || || | Sbjct 2655067 ACCAGCAATGGCTTTTGCCAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAAC 2655126 Query 14446 ACCACGTGGGATCCTGGCACC-ACTGCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCA 14504 ||| ||||||| |||||| |||| || | | | ||||| | || || || |||| Sbjct 2655127 ACCTTTGGGGATCCGGGCACCAACTG-CAGTGAACCTCTCAGGCTTCTTCAGAAACTCCA 2655185 Query 14505 CGATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGTCA 14551 | | ||| || || | ||| || |||||| || |||| ||| Sbjct 2655186 CCACTTCCATGAAATCCTGCTTGGCTTCGTCGACTCCAGCAACATCA 2655232 >seq1432 Length=495105 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| ||||| ||||| | || || | ||| || ||||| || || ||||| | ||| Sbjct 66059 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACC 66000 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || |||||||||||||| |||| |||||| ||||||||||| || || || || || Sbjct 65999 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCA 65940 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || || | || | |||||| ||| Sbjct 65939 AGCAAAAGCTACGATTCTCTCAGCGAAG 65912 >seq772 Length=329654 Score = 86.0 bits (94), Expect = 8e-12 Identities = 190/282 (67%), Gaps = 10/282 (4%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||||||||| || ||||| || || ||||| | |||||||| || Sbjct 253388 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCCA-C 253330 Query 14212 CATACCACCC-GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 || | ||| || | | |||| |||| || || ||||| ||||| || || || |||| Sbjct 253329 CACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACACAATAC 253270 Query 14271 ATGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326 | || || |||| || ||||| | ||| | ||||| ||||| ||| Sbjct 253269 AAGGAGCTTTCGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCCACA 253214 Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCA 14386 || ||||| | ||||||||| | | || | ||| | ||| || || | ||| Sbjct 253213 CCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCTGCTTCT 253154 Query 14387 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || || | |||| || | || ||||||||||| || ||| Sbjct 253153 CCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGGT 253112 >seq866 Length=976259 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 11924 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTC 11983 ||||||||||||| | || |||||||| || || || || | |||||||||||||| Sbjct 345314 GAATTACCGAGAAGCGTACGGTCTCTTCGCATGTAACGGAATCTTGTTCAACCACGAGTC 345373 Query 11984 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC 12022 ||| || ||||| | |||||||||| | ||||||||| Sbjct 345374 ACCTCGCCGTGGTGAGAATTTCGTGACGAGGAAGATCAC 345412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618417891544840