Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq894 125 9e-24
seq1432 87.8 2e-12
seq772 86.0 8e-12
seq866 84.2 3e-11
>seq894
Length=3336090
Score = 125 bits (138), Expect = 9e-24
Identities = 276/407 (68%), Gaps = 10/407 (2%)
Strand=Plus/Plus
Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209
||||| |||||||||||||||| ||| ||||| | ||| ||||| | ||||||||| |
Sbjct 2654831 TCAAAACCATCCATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 2654890
Query 14210 GGCATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266
|||| || | | | |||| |||| || || || |||||||| | ||||||
Sbjct 2654891 CC---ACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACA 2654947
Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326
|| ||||| |||||| ||| || || | ||| || ||||| |||||| |||
Sbjct 2654948 ATGCATGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACTCTTGAGGCACCAACA 2655007
Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTC 14385
|| ||||||||||| ||||| | | | | | || | | |||||| || | |||
Sbjct 2655008 CCGACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGCACACCGGCTTC 2655066
Query 14386 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGC 14445
||| || |||||| || || ||||| ||||| || || || || | || || |
Sbjct 2655067 ACCAGCAATGGCTTTTGCCAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAAC 2655126
Query 14446 ACCACGTGGGATCCTGGCACC-ACTGCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCA 14504
||| ||||||| |||||| |||| || | | | ||||| | || || || ||||
Sbjct 2655127 ACCTTTGGGGATCCGGGCACCAACTG-CAGTGAACCTCTCAGGCTTCTTCAGAAACTCCA 2655185
Query 14505 CGATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGTCA 14551
| | ||| || || | ||| || |||||| || |||| |||
Sbjct 2655186 CCACTTCCATGAAATCCTGCTTGGCTTCGTCGACTCCAGCAACATCA 2655232
>seq1432
Length=495105
Score = 87.8 bits (96), Expect = 2e-12
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
||| ||||| ||||| | || || | ||| || ||||| || || ||||| | |||
Sbjct 66059 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACC 66000
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
|| |||||||||||||| |||| |||||| ||||||||||| || || || || ||
Sbjct 65999 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCA 65940
Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAG 130174
|| || || | || | |||||| |||
Sbjct 65939 AGCAAAAGCTACGATTCTCTCAGCGAAG 65912
>seq772
Length=329654
Score = 86.0 bits (94), Expect = 8e-12
Identities = 190/282 (67%), Gaps = 10/282 (4%)
Strand=Plus/Minus
Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211
||| ||||||||||||||||| || ||||| || || ||||| | |||||||| ||
Sbjct 253388 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCCA-C 253330
Query 14212 CATACCACCC-GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270
|| | ||| || | | |||| |||| || || ||||| ||||| || || || ||||
Sbjct 253329 CACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACACAATAC 253270
Query 14271 ATGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326
| || || |||| || ||||| | ||| | ||||| ||||| |||
Sbjct 253269 AAGGAGCTTTCGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCCACA 253214
Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCA 14386
|| ||||| | ||||||||| | | || | ||| | ||| || || | |||
Sbjct 253213 CCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCTGCTTCT 253154
Query 14387 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428
|| || | |||| || | || ||||||||||| || |||
Sbjct 253153 CCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGGT 253112
>seq866
Length=976259
Score = 84.2 bits (92), Expect = 3e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 11924 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTC 11983
||||||||||||| | || |||||||| || || || || | ||||||||||||||
Sbjct 345314 GAATTACCGAGAAGCGTACGGTCTCTTCGCATGTAACGGAATCTTGTTCAACCACGAGTC 345373
Query 11984 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC 12022
||| || ||||| | |||||||||| | |||||||||
Sbjct 345374 ACCTCGCCGTGGTGAGAATTTCGTGACGAGGAAGATCAC 345412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618417891544840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |