Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq894 132 6e-26
seq1757 116 4e-21
seq1432 105 8e-18
seq772 105 8e-18
seq945 104 3e-17
seq415 91.5 2e-13
seq1009 86.0 7e-12
>seq894
Length=3336090
Score = 132 bits (146), Expect = 6e-26
Identities = 327/492 (66%), Gaps = 8/492 (2%)
Strand=Plus/Plus
Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583
|| ||||| || ||||| | || | ||| ||||| || || | | || || ||
Sbjct 2654744 CGGTCAAACCGTCCTGGCCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2654803
Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643
|| | || | || ||| || | | ||||||||||||||||| |||| || || |||
Sbjct 2654804 GCCACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 2654863
Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700
| || ||||| | ||||||||| || |||| |||| | | |||| | ||
Sbjct 2654864 AGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTACCA 2654920
Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760
|| ||||| || ||||| | ||| || |||||||| |||||| || || ||
Sbjct 2654921 ACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTGAAA 2654980
Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820
||||| || || | ||| || ||||| ||||||||||| ||||| | | | | |
Sbjct 2654981 AGATCGCGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-A 2655039
Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879
|| | | |||||| ||| | |||||| ||||||||| || || || || || ||
Sbjct 2655040 GATGGAAAAGAAGGGCACACCGGCTTCACCAGCAATGGCTTTTGCCAGCAGGGTTTTCCC 2655099
Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTA 9939
||||| || ||| | ||||| ||||| || ||| ||| ||| | || | |
Sbjct 2655100 AGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACTGCAGTGAA 2655159
Query 9940 TCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCAAT 9999
|||||||| | ||| ||||| ||||| | ||| || || | ||||| |||| |
Sbjct 2655160 CCTCTCAGGCTTCTTCAGAAACTCCACCACTTCCATGAAATCCTGCTTGGCTTCGTCGAC 2655219
Query 10000 CCCCTCAACATC 10011
|| |||||||
Sbjct 2655220 TCCAGCAACATC 2655231
>seq1757
Length=376612
Score = 116 bits (128), Expect = 4e-21
Identities = 283/422 (67%), Gaps = 10/422 (2%)
Strand=Plus/Minus
Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615
|||||| || || | | ||| || || || | || | || ||| || | | |||||
Sbjct 158882 ATCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAA 158823
Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675
|||||||||||| || | || || || | || ||||| | ||||||||| ||
Sbjct 158822 ACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCTCC--- 158766
Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732
|||| || | | | |||| | || || ||||| || ||||| | ||||| |||||
Sbjct 158765 ACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACAATGCA 158706
Query 9733 TGGTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791
|| || || || ||| ||| ||||| || || | ||| || ||||| |
Sbjct 158705 AGGAGCGTTCTCCTTGGCTTTCTTGAAA-AGATCACGGACTCTTGAGGCACCAACACCGA 158647
Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850
|||||||||| ||||| | | | || || | || ||| || ||| || ||||||
Sbjct 158646 CAAACATCTCAACAAACTCAGAACCAGAG-ATGGAGAAGAAAGGCACACCAGCTTCACCA 158588
Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910
||||||||| || | ||| || || || ||||| || ||| ||||| |||||
Sbjct 158587 GCAATGGCTTTTGCCAAAAGGGTTTTCCCAGTACCAGGGGGACCAATAAGGAGAACACCT 158528
Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATT 9970
||||||||||| ||| || | ||||||| |||| ||| ||||| ||||| | |
Sbjct 158527 TTCGGAATCTTGGCACCAACCGCAGTGAATCTCTCGGGTTTCTTCAGAAACTCCACCACT 158468
Query 9971 TC 9972
||
Sbjct 158467 TC 158466
>seq1432
Length=495105
Score = 105 bits (116), Expect = 8e-18
Identities = 395/609 (65%), Gaps = 18/609 (3%)
Strand=Plus/Plus
Query 94345 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 94404
||||| ||||| | || |||| | | |||| | ||||||| | | || |||||
Sbjct 65460 GAACCAATCCTAACACCAACACCAGATCGATTCTGTATGTTCCCAATCCAATACCCACAG 65519
Query 94405 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATT--GGACTGCTGAAGAGGTAGATC 94462
||||||| | || ||||| || || | || || |||| || ||||| || ||||
Sbjct 65520 ATCTGGGAGATGTACAAGAAAGCCGAA--GCGTCCTTCTGGACCGCCGAAGAAGTCGATC 65577
Query 94463 TCTCAAAGGATTTGGACGATTGG-AAGACTC--TAAATGAAAATGAAAAGAAATTCATAA 94519
|||| | || ||| ||| || |||| ||| | | ||| | ||||| |
Sbjct 65578 TCTCTCAAGACAATCGCGACTGGGAAAACTCACTAACCAACGACGAACGTCACTTCATCA 65637
Query 94520 AATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAACA 94579
|| || |||| || ||||| || | ||| || ||||| ||| | |||||| || ||||
Sbjct 65638 AACACGTCCTCGCCTTCTTCGCCGCATCAGACGGAATCGTTCTCGAGAATCTCTC-AACA 65696
Query 94580 ACTTTGCTGAT-GAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCAT 94638
|| || || || || ||| ||||| | ||||||| | | || ||
Sbjct 65697 CGATTCATGTCCGATGTTCAGGTCTCAGAAGCTCGTGCCTTCTACGGATTCCAAA-TCGC 65755
Query 94639 AAT-GAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGG 94697
||| || | | ||| |||| || ||| || | |||| || || || ||
Sbjct 65756 AATCGAGAATATTCATTCTGAGATGTATAGTCTCCTTCTCGACACTTACATCAAAGACAA 65815
Query 94698 TGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGC 94757
|||| | || |||||| || ||| ||||| |||| ||| | ||||||||
Sbjct 65816 CAAAGAGAGAGATCATCTCTTTCGCGCAATCGAAACAATTCCTTGTGTGACGAAGAAAGC 65875
Query 94758 GGATTGGGCTATGAAGTGGTTTGATACAAAG--TCGCGTTCCTTTGCTGAGCGACTCTTC 94815
|| ||||| ||||| ||| | ||| | || | ||| |||||| || || |
Sbjct 65876 AGAATGGGCAATGAAATGGAT-----CAACGGATCTCAAAGCTTCGCTGAGAGAATCGTA 65930
Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875
|| ||||| || ||||| ||||| |||||||||||| ||| || | || | ||| |
Sbjct 65931 GCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGCTTTTGTTCGATATTCTGGTTG 65990
Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935
||||| |||||| | ||||| || ||| ||||| ||||| | || || | |||||
Sbjct 65991 AAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGACGAA 66050
Query 94936 GGACTCCAC 94944
|| || |||
Sbjct 66051 GGTCTTCAC 66059
>seq772
Length=329654
Score = 105 bits (116), Expect = 8e-18
Identities = 197/282 (70%), Gaps = 12/282 (4%)
Strand=Plus/Minus
Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672
||| ||||||||||| |||||||| || ||||| || ||||| | |||||||| |
Sbjct 253388 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 253331
Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730
| ||| ||||| | | |||| | ||||| ||||||||||||||||| || || ||
Sbjct 253330 CCACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACACAATA 253271
Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786
|| || ||||| || || ||||| | ||||| || || || | || |||||
Sbjct 253270 CAAGG--AGCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCACCCAC 253215
Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846
||||||||| | ||||||||| | | || | ||| | ||| || || | |||
Sbjct 253214 ACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCTGCTTC 253155
Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
|| || | |||| || | ||| ||||| |||||||| ||
Sbjct 253154 TCCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGG 253113
>seq945
Length=941802
Score = 104 bits (114), Expect = 3e-17
Identities = 197/282 (70%), Gaps = 10/282 (4%)
Strand=Plus/Plus
Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672
||| ||||||||||| ||||| | || |||||||| ||||| | |||||||| ||
Sbjct 882099 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCATCATTTCCT-- 882156
Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730
| | ||| ||||| | | ||| | || || || ||||||||||||||||| || ||
Sbjct 882157 CCTCCCATCCCAGCTCCTCTCTGCCTCCCAACAGCGTCAATCTCATCAATGAATACAATA 882216
Query 9731 CATGGTTGATTTTCGC-GAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 9787
|| || || ||| | ||| || || | ||||| || || || | || ||||||
Sbjct 882217 CAAGG-TGCTTTCGACTTAGCCTTCTCGAACAAATCCC-TA-ACTCTAGATGCACCCACA 882273
Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847
|||||||| | ||||||||| | || ||| | || || ||| || || | ||
Sbjct 882274 CCAACAAAAAGCTCCACAAACTCTGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCCTCC 882333
Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889
|| || | || | || || || |||||||||||||| |||
Sbjct 882334 CCAGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGC 882375
>seq415
Length=609146
Score = 91.5 bits (100), Expect = 2e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 94825 TGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGA 94884
|||||||| |||||||||||||| || ||| || | || | ||||| ||||| |||
Sbjct 100555 TGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTTTGTTCAATCTTCTGGCTAAAGAAACGA 100496
Query 94885 GGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
|| |||||||| || || || |||||||| | |||||||| ||||| ||||| |||
Sbjct 100495 GGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCTCGAGACGAAGGACTACAC 100436
>seq1009
Length=3105692
Score = 86.0 bits (94), Expect = 7e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 105798 TTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCA 105857
||||||||||||| |||||||| |||| || |||||||| |||||| ||||| | ||
Sbjct 1457629 TTGACATGGCCGCCGATCGTGGATGCTTTATAGATCAAAGCCAAAGTTTGAATATACACA 1457688
Query 105858 TGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGG 105914
|||||| |||| | | || ||| ||||| | ||| | ||| |||||| ||||
Sbjct 1457689 TGGAAAAGCCAAACTTTGCAAAACTCACTTCTTTACACTTCTACGCTTGGAAAAAGG 1457745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583244475988360
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