Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq894 132 6e-26 seq1757 116 4e-21 seq1432 105 8e-18 seq772 105 8e-18 seq945 104 3e-17 seq415 91.5 2e-13 seq1009 86.0 7e-12 >seq894 Length=3336090 Score = 132 bits (146), Expect = 6e-26 Identities = 327/492 (66%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | || | ||| ||||| || || | | || || || Sbjct 2654744 CGGTCAAACCGTCCTGGCCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2654803 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||| || | | ||||||||||||||||| |||| || || ||| Sbjct 2654804 GCCACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 2654863 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | || ||||| | ||||||||| || |||| |||| | | |||| | || Sbjct 2654864 AGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTACCA 2654920 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || ||||| || ||||| | ||| || |||||||| |||||| || || || Sbjct 2654921 ACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTGAAA 2654980 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || | ||| || ||||| ||||||||||| ||||| | | | | | Sbjct 2654981 AGATCGCGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-A 2655039 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 || | | |||||| ||| | |||||| ||||||||| || || || || || || Sbjct 2655040 GATGGAAAAGAAGGGCACACCGGCTTCACCAGCAATGGCTTTTGCCAGCAGGGTTTTCCC 2655099 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTA 9939 ||||| || ||| | ||||| ||||| || ||| ||| ||| | || | | Sbjct 2655100 AGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACTGCAGTGAA 2655159 Query 9940 TCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCAAT 9999 |||||||| | ||| ||||| ||||| | ||| || || | ||||| |||| | Sbjct 2655160 CCTCTCAGGCTTCTTCAGAAACTCCACCACTTCCATGAAATCCTGCTTGGCTTCGTCGAC 2655219 Query 10000 CCCCTCAACATC 10011 || ||||||| Sbjct 2655220 TCCAGCAACATC 2655231 >seq1757 Length=376612 Score = 116 bits (128), Expect = 4e-21 Identities = 283/422 (67%), Gaps = 10/422 (2%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || || | | ||| || || || | || | || ||| || | | ||||| Sbjct 158882 ATCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAA 158823 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 |||||||||||| || | || || || | || ||||| | ||||||||| || Sbjct 158822 ACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCTCC--- 158766 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| || | | | |||| | || || ||||| || ||||| | ||||| ||||| Sbjct 158765 ACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACAAAGACAATGCA 158706 Query 9733 TGGTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 || || || || ||| ||| ||||| || || | ||| || ||||| | Sbjct 158705 AGGAGCGTTCTCCTTGGCTTTCTTGAAA-AGATCACGGACTCTTGAGGCACCAACACCGA 158647 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 |||||||||| ||||| | | | || || | || ||| || ||| || |||||| Sbjct 158646 CAAACATCTCAACAAACTCAGAACCAGAG-ATGGAGAAGAAAGGCACACCAGCTTCACCA 158588 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 ||||||||| || | ||| || || || ||||| || ||| ||||| ||||| Sbjct 158587 GCAATGGCTTTTGCCAAAAGGGTTTTCCCAGTACCAGGGGGACCAATAAGGAGAACACCT 158528 Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATT 9970 ||||||||||| ||| || | ||||||| |||| ||| ||||| ||||| | | Sbjct 158527 TTCGGAATCTTGGCACCAACCGCAGTGAATCTCTCGGGTTTCTTCAGAAACTCCACCACT 158468 Query 9971 TC 9972 || Sbjct 158467 TC 158466 >seq1432 Length=495105 Score = 105 bits (116), Expect = 8e-18 Identities = 395/609 (65%), Gaps = 18/609 (3%) Strand=Plus/Plus Query 94345 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 94404 ||||| ||||| | || |||| | | |||| | ||||||| | | || ||||| Sbjct 65460 GAACCAATCCTAACACCAACACCAGATCGATTCTGTATGTTCCCAATCCAATACCCACAG 65519 Query 94405 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATT--GGACTGCTGAAGAGGTAGATC 94462 ||||||| | || ||||| || || | || || |||| || ||||| || |||| Sbjct 65520 ATCTGGGAGATGTACAAGAAAGCCGAA--GCGTCCTTCTGGACCGCCGAAGAAGTCGATC 65577 Query 94463 TCTCAAAGGATTTGGACGATTGG-AAGACTC--TAAATGAAAATGAAAAGAAATTCATAA 94519 |||| | || ||| ||| || |||| ||| | | ||| | ||||| | Sbjct 65578 TCTCTCAAGACAATCGCGACTGGGAAAACTCACTAACCAACGACGAACGTCACTTCATCA 65637 Query 94520 AATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAACA 94579 || || |||| || ||||| || | ||| || ||||| ||| | |||||| || |||| Sbjct 65638 AACACGTCCTCGCCTTCTTCGCCGCATCAGACGGAATCGTTCTCGAGAATCTCTC-AACA 65696 Query 94580 ACTTTGCTGAT-GAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCAT 94638 || || || || || ||| ||||| | ||||||| | | || || Sbjct 65697 CGATTCATGTCCGATGTTCAGGTCTCAGAAGCTCGTGCCTTCTACGGATTCCAAA-TCGC 65755 Query 94639 AAT-GAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGG 94697 ||| || | | ||| |||| || ||| || | |||| || || || || Sbjct 65756 AATCGAGAATATTCATTCTGAGATGTATAGTCTCCTTCTCGACACTTACATCAAAGACAA 65815 Query 94698 TGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGC 94757 |||| | || |||||| || ||| ||||| |||| ||| | |||||||| Sbjct 65816 CAAAGAGAGAGATCATCTCTTTCGCGCAATCGAAACAATTCCTTGTGTGACGAAGAAAGC 65875 Query 94758 GGATTGGGCTATGAAGTGGTTTGATACAAAG--TCGCGTTCCTTTGCTGAGCGACTCTTC 94815 || ||||| ||||| ||| | ||| | || | ||| |||||| || || | Sbjct 65876 AGAATGGGCAATGAAATGGAT-----CAACGGATCTCAAAGCTTCGCTGAGAGAATCGTA 65930 Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || ||||| || ||||| ||||| |||||||||||| ||| || | || | ||| | Sbjct 65931 GCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGCTTTTGTTCGATATTCTGGTTG 65990 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 ||||| |||||| | ||||| || ||| ||||| ||||| | || || | ||||| Sbjct 65991 AAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGACGAA 66050 Query 94936 GGACTCCAC 94944 || || ||| Sbjct 66051 GGTCTTCAC 66059 >seq772 Length=329654 Score = 105 bits (116), Expect = 8e-18 Identities = 197/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| |||||||| || ||||| || ||||| | |||||||| | Sbjct 253388 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 253331 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | ||| ||||| | | |||| | ||||| ||||||||||||||||| || || || Sbjct 253330 CCACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACACAATA 253271 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || ||||| || || ||||| | ||||| || || || | || ||||| Sbjct 253270 CAAGG--AGCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCACCCAC 253215 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||||||||| | ||||||||| | | || | ||| | ||| || || | ||| Sbjct 253214 ACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCTGCTTC 253155 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || | |||| || | ||| ||||| |||||||| || Sbjct 253154 TCCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGG 253113 >seq945 Length=941802 Score = 104 bits (114), Expect = 3e-17 Identities = 197/282 (70%), Gaps = 10/282 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| | || |||||||| ||||| | |||||||| || Sbjct 882099 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCATCATTTCCT-- 882156 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| ||||| | | ||| | || || || ||||||||||||||||| || || Sbjct 882157 CCTCCCATCCCAGCTCCTCTCTGCCTCCCAACAGCGTCAATCTCATCAATGAATACAATA 882216 Query 9731 CATGGTTGATTTTCGC-GAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 9787 || || || ||| | ||| || || | ||||| || || || | || |||||| Sbjct 882217 CAAGG-TGCTTTCGACTTAGCCTTCTCGAACAAATCCC-TA-ACTCTAGATGCACCCACA 882273 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847 |||||||| | ||||||||| | || ||| | || || ||| || || | || Sbjct 882274 CCAACAAAAAGCTCCACAAACTCTGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCCTCC 882333 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889 || || | || | || || || |||||||||||||| ||| Sbjct 882334 CCAGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGC 882375 >seq415 Length=609146 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 94825 TGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGA 94884 |||||||| |||||||||||||| || ||| || | || | ||||| ||||| ||| Sbjct 100555 TGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTTTGTTCAATCTTCTGGCTAAAGAAACGA 100496 Query 94885 GGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || |||||||| || || || |||||||| | |||||||| ||||| ||||| ||| Sbjct 100495 GGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCTCGAGACGAAGGACTACAC 100436 >seq1009 Length=3105692 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 105798 TTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCA 105857 ||||||||||||| |||||||| |||| || |||||||| |||||| ||||| | || Sbjct 1457629 TTGACATGGCCGCCGATCGTGGATGCTTTATAGATCAAAGCCAAAGTTTGAATATACACA 1457688 Query 105858 TGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGG 105914 |||||| |||| | | || ||| ||||| | ||| | ||| |||||| |||| Sbjct 1457689 TGGAAAAGCCAAACTTTGCAAAACTCACTTCTTTACACTTCTACGCTTGGAAAAAGG 1457745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583244475988360