Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq716 93.3 3e-14 >seq716 Length=321914 Score = 93.3 bits (102), Expect = 3e-14 Identities = 130/181 (72%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 111730 TAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGT 111789 || ||||| ||||| || ||| |||||| || || | ||| | | | || | ||| Sbjct 10960 TACACATGAGCATCCCCAATAACATGGATAAAGTCACCAGGGACAAGATCACACACGTGA 11019 Query 111790 GCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATA 111849 || |||||| | || || ||| ||| |||||||||| |||||||||| ||||||||| Sbjct 11020 GCCATCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTATATGGCACACCAAGGCCCATA 11079 Query 111850 TCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAA 111909 || | || | ||||| | |||||||| |||| || || |||||| || || ||| Sbjct 11080 TCCGCTGAACGCTGATACATTTGACATGAGAGTTCGCCTTTTGCCACATAGAACTG-CAA 11138 Query 111910 A 111910 | Sbjct 11139 A 11139 Score = 93.3 bits (102), Expect = 3e-14 Identities = 130/181 (72%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 111730 TAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGT 111789 || ||||| ||||| || ||| |||||| || || | ||| | | | || | ||| Sbjct 17657 TACACATGAGCATCCCCAATAACATGGATAAAATCACCAGGAACAAGATCACACACGTGA 17716 Query 111790 GCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATA 111849 || | |||| | || || ||| ||| ||||||||||||||||||||| ||||||||| Sbjct 17717 GCCAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAATGGCACACCAAGGCCCATA 17776 Query 111850 TCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAA 111909 || | || | ||||| | |||||||| |||| || || |||||| || || ||| Sbjct 17777 TCCGCTGAACGCTGATACATTTGACATGAGAGTTCCCCTTCTGCCACATAGAACTG-CAA 17835 Query 111910 A 111910 | Sbjct 17836 A 17836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391934904661957