Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 84.2 2e-11
>seq1432
Length=495105
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/192 (70%), Gaps = 8/192 (4%)
Strand=Plus/Plus
Query 59931 AAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCA----TTTGCACAACGTCT 59986
|||||||||||||| ||| | ||||| | ||| | ||| || || | | |
Sbjct 65871 AAAGCAGAATGGGCAATGAAATGGATCAAC---GGATC-TCAAAGCTTCGCTGAGAGAAT 65926
Query 59987 CATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTG 60046
| |||||||||| ||||| ||||| || ||||||||||| || ||| | || |||||
Sbjct 65927 CGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGCTTTTGTTCGATATTCTG 65986
Query 60047 GCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGA 60106
| | || || || || | ||||| || || | ||||| ||||| ||||||| | ||
Sbjct 65987 GTTGAAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGA 66046
Query 60107 CGAGGGCCTCCA 60118
||| || || ||
Sbjct 66047 CGAAGGTCTTCA 66058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548509448162160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |