Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1432 84.2 2e-11 >seq1432 Length=495105 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/192 (70%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 59931 AAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCA----TTTGCACAACGTCT 59986 |||||||||||||| ||| | ||||| | ||| | ||| || || | | | Sbjct 65871 AAAGCAGAATGGGCAATGAAATGGATCAAC---GGATC-TCAAAGCTTCGCTGAGAGAAT 65926 Query 59987 CATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTG 60046 | |||||||||| ||||| ||||| || ||||||||||| || ||| | || ||||| Sbjct 65927 CGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGCTTTTGTTCGATATTCTG 65986 Query 60047 GCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGA 60106 | | || || || || | ||||| || || | ||||| ||||| ||||||| | || Sbjct 65987 GTTGAAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGA 66046 Query 60107 CGAGGGCCTCCA 60118 ||| || || || Sbjct 66047 CGAAGGTCTTCA 66058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548509448162160