Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1180 89.7 6e-13
seq443 89.7 6e-13
seq920 87.8 2e-12
seq895 86.0 7e-12
>seq1180
Length=4302264
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 1995998 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1996057
Query 79684 TGAGCTACGAAAGC 79697
|||||||||| |||
Sbjct 1996058 TGAGCTACGAGAGC 1996071
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 3673281 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3673222
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 3673221 TGAGCTATGAAAGC 3673208
>seq443
Length=3098630
Score = 89.7 bits (98), Expect = 6e-13
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681
||||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||
Sbjct 1541985 ACTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 1542044
Query 79682 ATTGAGCTACGAAAGC 79697
| ||||||| ||||||
Sbjct 1542045 ACTGAGCTATGAAAGC 1542060
>seq920
Length=482101
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/75 (87%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682
|||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 119515 CTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 119574
Query 79683 TTGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 119575 CTGAGCTATGAAAGC 119589
Score = 82.4 bits (90), Expect = 8e-11
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 413627 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 413686
Query 79684 TGAGCTACGAAAGCA 79698
|||||||||| ||||
Sbjct 413687 TGAGCTACGAGAGCA 413701
>seq895
Length=2238827
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 128771 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 128830
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 128831 TGAGCTATGAAAGC 128844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547200684792200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |