Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq960 354 1e-92 seq1154 237 2e-57 seq1013 89.7 6e-13 >seq960 Length=17752 Score = 354 bits (392), Expect = 1e-92 Identities = 859/1294 (66%), Gaps = 93/1294 (7%) Strand=Plus/Minus Query 183986 GCACATGCTTCAATTGCTATGATAAGAGACTATAATC---CTGTTCAACATATGGGAAAT 184042 || ||||| | ||| |||| ||||||||||| ||| || || | ||| ||| Sbjct 17749 GCGCATGCAGCCATTTTTATGGTAAGAGACTATGATCTAACTAATCGATATAAC---AAT 17693 Query 184043 GTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAGTCACTTGAACTGGGTATGC 184102 |||||||| | | || | | | ||||||||||| || | || ||||||| Sbjct 17692 TTATTAGATCGTGTCCTGAGGCATCGCGATGCAATCATATCACATCTCTACCGGGTATGT 17633 Query 184103 ATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATGATATTATGAGAGCATTG 184162 || ||| |||| || || ||||||||| | |||||||| ||||||| ||||| || || Sbjct 17632 ATATTTCTAGGCTTCCACAGTTTTGGTTTGTATATTCATAATGATACCATGAGTGCTTTA 17573 Query 184163 GGTAGACCTAATGATCTATTCAGTGATACAGCAATACAATTACAACCTGTATTTGCACAG 184222 || | || | ||| | || |||| || |||||||||||||| || ||||| || Sbjct 17572 GGGCGTCCACAAGATATGTTTTCAGATATTGCTATACAATTACAACCAGTCTTTGCTCAA 17513 Query 184223 TCTGTTCAGAGATTACATGCTTCATTATATAATGT------CTCTGATGTATTTG-GTGG 184275 | | || | ||||||| | | | ||| | ||| || | | | | Sbjct 17512 TGGATACAAAATACCCATGCTTTAGCACCTGGTGTAACAGCCCCTGGTGAAACAGCGAGC 17453 Query 184276 ATCA-----ACCA------CAATG-----------GTTGGTGGTAAGATTGCTAATGCT- 184312 | || || | || || ||||| || | ||| || | Sbjct 17452 ACCAGTTTGACTTGGGGGGCRGTGAGTTAGTAGCAGTGGGTGGCAAAGTAGCTT-TGTTA 17394 Query 184313 CCTTTTGTACTAGGTACAGCAGACTTTATGATACATCACATACACGC-TTTCCAGATTCA 184371 ||| || | |||| || ||||| ||| || ||||||| || || || ||| || ||||| Sbjct 17393 CCTATTCCATTAGGAACGGCAGATTTTTTGGTACATCATATTCATGCATTTACA-ATTCA 17335 Query 184372 TGTTTGTGTATTAATTCTTCTCAAGGGTGTTTTATACTCTAGAAACTCACAATTAATACC 184431 ||| ||||| || || | || |||||| ||| || | ||| | |||||||| Sbjct 17334 TGTGACGGTATTGATACTGTTGAAAGGTGTTCTATTTGCTCATAGCTCCCGTTTAATACC 17275 Query 184432 AGATAAGAGTAAGT-TAGGATTCAGATTCCCTTGTGATGGTCCTGGTAGAGGAGGCACTT 184490 |||||| || || | | || || | |||||||||||||| || || |||||||| || | Sbjct 17274 AGATAA-AGCAAATCTTGGTTTTCGTTTCCCTTGTGATGGGCCGGGAAGAGGAGGAACAT 17216 Query 184491 GTCAGGTATCAGGATGGGATCATGTATTCCTTGGTTTATTCTGGATGTATAATTGCATCT 184550 |||| ||||| | ||||||||||| ||| | || ||||||||||||| ||| || | Sbjct 17215 GTCAAGTATCTGCTTGGGATCATGTCTTCTTAGGACTATTCTGGATGTACAATGCTATTT 17156 Query 184551 CTATAGTAATCTTCCACTTTAGTTGGAGAATGCA---AGATGTATGGGGTCT-------- 184599 | ||||||| ||||| || ||||||| |||||| |||||| |||||| Sbjct 17155 CCGTAGTAATATTCCATTTCAGTTGGAAAATGCAGTCAGATGTTTGGGGTAGTATAAGTG 17096 Query 184600 ATCA----------------------GGAGGTAACTTTGCTCAGAGTTCAATTACAATCA 184637 |||| ||||| || ||||| |||||||| ||||| || | Sbjct 17095 ATCAAGGGGTGGTAACTCATATTACTGGAGGAAAATTTGCACAGAGTTCCATTACTATTA 17036 Query 184638 ATGGATGGTTGAGAGACTTCTTATGGTCACAGTCAAGTCAAGTTCTCAATAGTTATGGAC 184697 |||| ||| | | || ||||||||| |||| || ||| || | | |||||| Sbjct 17035 ATGGGTGGCTCCGCGATTTCTTATGGGCACAAGCATCTCAGGTAATTCAGTCTTATGGTT 16976 Query 184698 AA--GACATCAGCATGTATGGTTTGCTATTTCTTGGAGCACATTTTGTATGGGCATTCAG 184755 | ||| |||| ||||| | | || || || | |||||||||||||| ||||| Sbjct 16975 CTTCGTTATCTGCAT--ATGGTCTTTTTTTCCTAGGTACTCATTTTGTATGGGCTTTCAG 16918 Query 184756 TTTGATGTTCCTATGGAGTGGTAGAGGATACTGGCAAGAGTTGATAGAGTCTATTGCTTG 184815 ||| ||||| |||| || || | || || |||||||| | || || || |||| ||| Sbjct 16917 TTTAATGTTTCTATTCAGCGGGCGTGGTTATTGGCAAGAACTTATTGAATCCATTGTTTG 16858 Query 184816 GGCACATAACAAATTAAAACTTGCACCTACCATTCAACCAAGAGCAATGTCAATTACACA 184875 ||| ||||| |||||||||||||| ||| | | ||| | ||||| || ||| ||| Sbjct 16857 GGCTCATAATAAATTAAAACTTGCTCCTGCTACTCAGCATAGAGCCCTGAGCATTGTACA 16798 Query 184876 AGGACGTGCTGTTGGAGTTGCACACTTCTTACTTGGAGGTATTGCCACAACATGGGCATT 184935 |||||||| ||| ||||| | || | | | || || || |||||||||||||||||||| Sbjct 16797 AGGACGTGTTGTAGGAGTAACCCATTACCTTCTAGGTGGAATTGCCACAACATGGGCATT 16738 Query 184936 CTTCTTTGCTCACCTTATCCCCTTAAGTTAAATCATGGCTA-------CTAAAA--CAAA 184986 |||||| || |||| | ||| || ||||||| | ||| || Sbjct 16737 CTTCTTAGCAAGAATTAT----TGCAGTAGGATAATGGCTAGGAGGATTTGAAAGGCATT 16682 Query 184987 ATTTCCAAAATTTAATCAAGATTTGGCAAGTGATCCTACAACTAGGAGATTGTGGTATGG 185046 || |||| |||| |||| || || || || || ||| | | | |||| ||| Sbjct 16681 ATGGCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGG 16622 Query 185047 ATTAGCAACTGCACATGACTTTGAGAGTCATGACAATATGACAGAAGAGAAGT-TATATC 185105 | || || ||||||||||| |||||| |||| |||| || |||| | || | |||| Sbjct 16621 TATTGCTACCGCACATGACTTCGAGAGTTATGATGATATTACTCAAGA-ACGTCTTTATC 16563 Query 185106 AAAAATTATTTGCTACACACTTTGGTCATCTTGCAATTATCTTTCTATGGGTTGCAGGTA 185165 | || | |||||| | || || || || | ||||| | ||||| ||| | || | Sbjct 16562 AGAATATTTTTGCTTCTCATTTCGGGCAATTAGCAATAACTTTTCTGTGGACTTTTGGAA 16503 Query 185166 ATTTAATTCATATAGCATGGCAAGGTAACTTTGA 185199 |||| ||||| |||| |||||||| || ||||| Sbjct 16502 ATTTGTTTCATGTAGCTTGGCAAGGCAATTTTGA 16469 Score = 293 bits (324), Expect = 3e-74 Identities = 415/582 (71%), Gaps = 4/582 (1%) Strand=Plus/Minus Query 186605 GGTTCAAAACTCATACCAGATAAGAAAGATTTAGGATATTCATTCCCTTGTGATGGTCCA 186664 ||||| || | || |||||||| || ||||| || ||| || ||||| |||||||| Sbjct 1901 GGTTCCAAGTTAATGCCAGATAAAAAGGATTTCGGGTATAGTTTTCCTTGCGATGGTCCG 1842 Query 186665 GGCAGAGGTGGTACTTGTGATAGTTCTGGTTGGGATGCTTTCTATCTCTCTGTGTTCTGG 186724 || ||||||||||||||| || ||| | |||||| || || ||| | | || |||||| Sbjct 1841 GGACGAGGTGGTACTTGTGTTATTTCGGCTTGGGACGCATTTTATTTGGCAGTTTTCTGG 1782 Query 186725 G---CA-TTCAATACAATAGCATGGGCAGATTTTTATTGGCACTGGAAGAACCTTGCTAG 186780 || || ||||| || | ||||| |||||||||||| ||||| || | | Sbjct 1781 ATTCCAGTTAAATACTATTGGATGGGTTACTTTTTATTGGCATTGGAAACACATCACATT 1722 Query 186781 TTGGCAAGGTAATCAGGCACAATTCAATACATCAGGAACATATCTTATGGGTTGGTTCAG 186840 ||||| ||||| | |||| || ||| ||| || ||| | ||||| ||||| || Sbjct 1721 ATGGCAGGGTAACCTTTCACAGTTTAATGAATCTTCCACTTATTTGATGGGATGGTTAAG 1662 Query 186841 AGATTATCTCTGGGCGAATAGTGCGCCTGTAATCACAGGGTACACACCATTTGGTATGAA 186900 ||||||||| ||| || | | | | |||| || || | | ||||||||||| Sbjct 1661 AGATTATCTATGGTTAAACTCTTCACAACTTATCAATGGATATAACCMTTTTGGTATGAA 1602 Query 186901 TAATCTCTCTGTATGGGCATGGATGTTCTTGTTTGGTCATTTAGTTTGGGCAACAGGATT 186960 || | | || || ||||||||||||||||| ||||| ||| | |||||||| ||| |||| Sbjct 1601 TAGTTTATCAGTCTGGGCATGGATGTTCTTATTTGGGCATCTTGTTTGGGCTACAAGATT 1542 Query 186961 TATGTTCCTTATTTCTTGGAGAGGTTATTGGCAAGAGTTAATTGAGACTCTTGCTTGGGC 187020 ||||||| | ||||| ||| | ||||||| ||| || || ||||| ||| | || ||||| Sbjct 1541 TATGTTCTTAATTTCCTGGTGTGGTTATTCGCAGGAATTGATTGAAACTTTAGCATGGGC 1482 Query 187021 ACATCAAAGAACTCCAATAGCAAATATAGCAGGTTGGAGAGATAAACCAGTGGCACTTTC 187080 ||| || | || || | |||||| | | |||| |||||||||||| || ||||| Sbjct 1481 TCATGAACGCACACCTTTGGCAAATTTGATTCGCTGGAAAGATAAACCAGTAGCTCTTTC 1422 Query 187081 TATTGTTCAAGCAAGACTAGTTGGTTTATCACATTTTGCCATAGGATTTGTGCTTACCTA 187140 || || ||||||||| | ||||| ||| | || | | | |||| | | | | || || Sbjct 1421 AATCGTGCAAGCAAGATTGGTTGGATTAGCTCACTATTCTGTAGGTTATATATTCACTTA 1362 Query 187141 TGCACCATTCCTGATAGCAACAACAGCAAGTAGATACGGTTA 187182 ||| | ||| |||| || | ||| | | | || |||||| Sbjct 1361 TGCGGCTTTCTTGATTGCCTCCACATCGGGCAAATTCGGTTA 1320 >seq1154 Length=260834 Score = 237 bits (262), Expect = 2e-57 Identities = 374/534 (70%), Gaps = 2/534 (0%) Strand=Plus/Plus Query 182847 TAGCAAAAGGACCTAAAACAACCACATGGATATGGAATTTACACGCAGATGCTCATGATT 182906 |||| || |||||| | || ||||| ||||| ||||| |||| || ||||||| |||| Sbjct 120310 TAGCTAAGGGACCTGATACTACCACTTGGATCTGGAACCTACATGCTTATGCTCACGATT 120369 Query 182907 TTGATAAGCATTCTAGTGATCTGCAAGAGAATTCAAGAAAAATATTTGCTGCACACTTTG 182966 |||||| ||| | |||||| || | || | || ||||| ||||| ||| || || | Sbjct 120370 TTGATAGTCATACCAGTGATTTGGAGGAAATCTCTCGAAAAGTATTTAGTGCCCATTTCG 120429 Query 182967 CTCATCTAGGTATCATCTTTGTATGGATGAGCAGTTTCTTCTTTCAAGGTGCTAGGTTTT 183026 || || |||||| ||| | ||| |||| || | | || || |||||| | |||| Sbjct 120430 GCCAACTCTATATCATATTTCTTTGGCTGAGTAGCATGTATTTCCATGGTGCTCGTTTTT 120489 Query 183027 CAAACTATACAGGATGGTTGGCAGACCCAACTCATGTAAAACCTGGTGCTCAAGTGGTTT 183086 | || |||| || |||| || || || ||||| | |||| || ||| ||||||| Sbjct 120490 CCAATTATAAAGCATGGCTGAGTGATCCTACTCACATTGGACCTAGTAATCAGGTGGTTT 120549 Query 183087 GGCCTATACTTGGTCAAGAGATATTGAATGGAGATCAGGGTGCAGGATATCAAGGTATTA 183146 ||| ||| | || ||||| || ||||||||||| ||| | ||| | | ||| || | Sbjct 120550 GGCTAATAGTGGGCCAAGAAATCCTGAATGGAGATGTGGGCGGAGGCTTCCGAGGAATAA 120609 Query 183147 GAATTACATCTGGTTTATTTCAGATGTGGAGAGCATGGGGTATAACAAATGAAACTCAAC 183206 ||| || || || || |||||||| ||| |||||| || ||||| | |||| |||| Sbjct 120610 AAATAACCTCAGGCTTTTTTCAGATTTGGCGAGCATCCGGAATAACTAGTGAATAACAAC 120669 Query 183207 -TAATGGCGCTAGCACTAGGTGCTTTAGTTATGGCAGCAGTTATGTTTAATGCTGGTGCA 183265 | || | | ||| |||| || || || | ||| | | ||| || ||||||| Sbjct 120670 TTTATTGTAC-CGCAATAGGCGCATTGGTCTTCGCATCCTTAATGCTTTTTGCTGGTTGG 120728 Query 183266 TTTCATTTTCACGTTGCTGCTCCTAAGTTATCATGGTTTCAGAATGTAGAATCTATGATG 183325 || |||| |||| || ||||| || || | ||||| || |||||||||||||| || Sbjct 120729 TTCCATTATCACAAAGCAGCTCCAAAATTGGCTTGGTTCCAAGATGTAGAATCTATGTTG 120788 Query 183326 AATCATCACCTTGCAGGTTTGCTTGGTCTTGGTTCTTTAGGATGGGCAGGACAT 183379 ||||| || | ||||| | || || ||||| || | |||| ||||||| Sbjct 120789 AATCACCATTTAGCAGGGCTACTAGGACTTGGGTCCCTTTCTTGGGMAGGACAT 120842 Score = 102 bits (112), Expect = 1e-16 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 183615 ATCCTGTAACTGGCAGTCTTTGGATGACAGATATAGCACATCATCACCTAGCAATAGCAG 183674 |||| || ||||| |||| ||| | || ||||||||||||||||| |||| || ||| Sbjct 121042 ATCCAGTGACTGGGGGTCTATGGTTAACCGATATAGCACATCATCATTTAGCTATCGCAA 121101 Query 183675 TTATGTTTATCATTGCAGGTCATATGTATCGCACAAACTGGGGTATTGGTCAATCAATGA 183734 || | || | || || |||||||||||| | || ||||||||||||||| | || | Sbjct 121102 TTCTTTTCCTAATAGCGGGTCATATGTATAGGACCAACTGGGGTATTGGT-ATGGTATAA 121160 Query 183735 AAGAGATATTAGATGGTCAGAATGGT 183760 |||| || ||||| | ||| || ||| Sbjct 121161 AAGATATTTTAGAGGCTCATAAAGGT 121186 >seq1013 Length=1118043 Score = 89.7 bits (98), Expect = 6e-13 Identities = 98/129 (76%), Gaps = 6/129 (5%) Strand=Plus/Plus Query 183789 TATATGAATTTCTAGCAGAATCAAGACATGCACAACTATCACTGAATCTGGCAATGCTAG 183848 |||||||| ||||| || |||||| ||||| |||||||| ||||| || || ||| ||| Sbjct 1055475 TATATGAAATTCTAACAACATCAAGGCATGCTCAACTATCTCTGAACCTAGCTATGTTAG 1055534 Query 183849 GATCT---ATCAGTATCATAGTTTCACATCATATGTATGCAATGCCACCTTATCCATATC 183905 | ||| |||| | | ||| | || || |||||| | ||||| ||||||||||||| Sbjct 1055535 GCTCTTAAATCACTGTTGTAGCT---CACCAAATGTATTCCATGCCCCCTTATCCATATC 1055591 Query 183906 TTGGTATTG 183914 | | || || Sbjct 1055592 TAGCTACTG 1055600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631409527931240