Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_028955.1
Length=197361
Score E
Sequences producing significant alignments: (Bits) Value
seq960 354 1e-92
seq1154 237 2e-57
seq1013 89.7 6e-13
>seq960
Length=17752
Score = 354 bits (392), Expect = 1e-92
Identities = 859/1294 (66%), Gaps = 93/1294 (7%)
Strand=Plus/Minus
Query 183986 GCACATGCTTCAATTGCTATGATAAGAGACTATAATC---CTGTTCAACATATGGGAAAT 184042
|| ||||| | ||| |||| ||||||||||| ||| || || | ||| |||
Sbjct 17749 GCGCATGCAGCCATTTTTATGGTAAGAGACTATGATCTAACTAATCGATATAAC---AAT 17693
Query 184043 GTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAGTCACTTGAACTGGGTATGC 184102
|||||||| | | || | | | ||||||||||| || | || |||||||
Sbjct 17692 TTATTAGATCGTGTCCTGAGGCATCGCGATGCAATCATATCACATCTCTACCGGGTATGT 17633
Query 184103 ATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATGATATTATGAGAGCATTG 184162
|| ||| |||| || || ||||||||| | |||||||| ||||||| ||||| || ||
Sbjct 17632 ATATTTCTAGGCTTCCACAGTTTTGGTTTGTATATTCATAATGATACCATGAGTGCTTTA 17573
Query 184163 GGTAGACCTAATGATCTATTCAGTGATACAGCAATACAATTACAACCTGTATTTGCACAG 184222
|| | || | ||| | || |||| || |||||||||||||| || ||||| ||
Sbjct 17572 GGGCGTCCACAAGATATGTTTTCAGATATTGCTATACAATTACAACCAGTCTTTGCTCAA 17513
Query 184223 TCTGTTCAGAGATTACATGCTTCATTATATAATGT------CTCTGATGTATTTG-GTGG 184275
| | || | ||||||| | | | ||| | ||| || | | | |
Sbjct 17512 TGGATACAAAATACCCATGCTTTAGCACCTGGTGTAACAGCCCCTGGTGAAACAGCGAGC 17453
Query 184276 ATCA-----ACCA------CAATG-----------GTTGGTGGTAAGATTGCTAATGCT- 184312
| || || | || || ||||| || | ||| || |
Sbjct 17452 ACCAGTTTGACTTGGGGGGCRGTGAGTTAGTAGCAGTGGGTGGCAAAGTAGCTT-TGTTA 17394
Query 184313 CCTTTTGTACTAGGTACAGCAGACTTTATGATACATCACATACACGC-TTTCCAGATTCA 184371
||| || | |||| || ||||| ||| || ||||||| || || || ||| || |||||
Sbjct 17393 CCTATTCCATTAGGAACGGCAGATTTTTTGGTACATCATATTCATGCATTTACA-ATTCA 17335
Query 184372 TGTTTGTGTATTAATTCTTCTCAAGGGTGTTTTATACTCTAGAAACTCACAATTAATACC 184431
||| ||||| || || | || |||||| ||| || | ||| | ||||||||
Sbjct 17334 TGTGACGGTATTGATACTGTTGAAAGGTGTTCTATTTGCTCATAGCTCCCGTTTAATACC 17275
Query 184432 AGATAAGAGTAAGT-TAGGATTCAGATTCCCTTGTGATGGTCCTGGTAGAGGAGGCACTT 184490
|||||| || || | | || || | |||||||||||||| || || |||||||| || |
Sbjct 17274 AGATAA-AGCAAATCTTGGTTTTCGTTTCCCTTGTGATGGGCCGGGAAGAGGAGGAACAT 17216
Query 184491 GTCAGGTATCAGGATGGGATCATGTATTCCTTGGTTTATTCTGGATGTATAATTGCATCT 184550
|||| ||||| | ||||||||||| ||| | || ||||||||||||| ||| || |
Sbjct 17215 GTCAAGTATCTGCTTGGGATCATGTCTTCTTAGGACTATTCTGGATGTACAATGCTATTT 17156
Query 184551 CTATAGTAATCTTCCACTTTAGTTGGAGAATGCA---AGATGTATGGGGTCT-------- 184599
| ||||||| ||||| || ||||||| |||||| |||||| ||||||
Sbjct 17155 CCGTAGTAATATTCCATTTCAGTTGGAAAATGCAGTCAGATGTTTGGGGTAGTATAAGTG 17096
Query 184600 ATCA----------------------GGAGGTAACTTTGCTCAGAGTTCAATTACAATCA 184637
|||| ||||| || ||||| |||||||| ||||| || |
Sbjct 17095 ATCAAGGGGTGGTAACTCATATTACTGGAGGAAAATTTGCACAGAGTTCCATTACTATTA 17036
Query 184638 ATGGATGGTTGAGAGACTTCTTATGGTCACAGTCAAGTCAAGTTCTCAATAGTTATGGAC 184697
|||| ||| | | || ||||||||| |||| || ||| || | | ||||||
Sbjct 17035 ATGGGTGGCTCCGCGATTTCTTATGGGCACAAGCATCTCAGGTAATTCAGTCTTATGGTT 16976
Query 184698 AA--GACATCAGCATGTATGGTTTGCTATTTCTTGGAGCACATTTTGTATGGGCATTCAG 184755
| ||| |||| ||||| | | || || || | |||||||||||||| |||||
Sbjct 16975 CTTCGTTATCTGCAT--ATGGTCTTTTTTTCCTAGGTACTCATTTTGTATGGGCTTTCAG 16918
Query 184756 TTTGATGTTCCTATGGAGTGGTAGAGGATACTGGCAAGAGTTGATAGAGTCTATTGCTTG 184815
||| ||||| |||| || || | || || |||||||| | || || || |||| |||
Sbjct 16917 TTTAATGTTTCTATTCAGCGGGCGTGGTTATTGGCAAGAACTTATTGAATCCATTGTTTG 16858
Query 184816 GGCACATAACAAATTAAAACTTGCACCTACCATTCAACCAAGAGCAATGTCAATTACACA 184875
||| ||||| |||||||||||||| ||| | | ||| | ||||| || ||| |||
Sbjct 16857 GGCTCATAATAAATTAAAACTTGCTCCTGCTACTCAGCATAGAGCCCTGAGCATTGTACA 16798
Query 184876 AGGACGTGCTGTTGGAGTTGCACACTTCTTACTTGGAGGTATTGCCACAACATGGGCATT 184935
|||||||| ||| ||||| | || | | | || || || ||||||||||||||||||||
Sbjct 16797 AGGACGTGTTGTAGGAGTAACCCATTACCTTCTAGGTGGAATTGCCACAACATGGGCATT 16738
Query 184936 CTTCTTTGCTCACCTTATCCCCTTAAGTTAAATCATGGCTA-------CTAAAA--CAAA 184986
|||||| || |||| | ||| || ||||||| | ||| ||
Sbjct 16737 CTTCTTAGCAAGAATTAT----TGCAGTAGGATAATGGCTAGGAGGATTTGAAAGGCATT 16682
Query 184987 ATTTCCAAAATTTAATCAAGATTTGGCAAGTGATCCTACAACTAGGAGATTGTGGTATGG 185046
|| |||| |||| |||| || || || || || ||| | | | |||| |||
Sbjct 16681 ATGGCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGG 16622
Query 185047 ATTAGCAACTGCACATGACTTTGAGAGTCATGACAATATGACAGAAGAGAAGT-TATATC 185105
| || || ||||||||||| |||||| |||| |||| || |||| | || | ||||
Sbjct 16621 TATTGCTACCGCACATGACTTCGAGAGTTATGATGATATTACTCAAGA-ACGTCTTTATC 16563
Query 185106 AAAAATTATTTGCTACACACTTTGGTCATCTTGCAATTATCTTTCTATGGGTTGCAGGTA 185165
| || | |||||| | || || || || | ||||| | ||||| ||| | || |
Sbjct 16562 AGAATATTTTTGCTTCTCATTTCGGGCAATTAGCAATAACTTTTCTGTGGACTTTTGGAA 16503
Query 185166 ATTTAATTCATATAGCATGGCAAGGTAACTTTGA 185199
|||| ||||| |||| |||||||| || |||||
Sbjct 16502 ATTTGTTTCATGTAGCTTGGCAAGGCAATTTTGA 16469
Score = 293 bits (324), Expect = 3e-74
Identities = 415/582 (71%), Gaps = 4/582 (1%)
Strand=Plus/Minus
Query 186605 GGTTCAAAACTCATACCAGATAAGAAAGATTTAGGATATTCATTCCCTTGTGATGGTCCA 186664
||||| || | || |||||||| || ||||| || ||| || ||||| ||||||||
Sbjct 1901 GGTTCCAAGTTAATGCCAGATAAAAAGGATTTCGGGTATAGTTTTCCTTGCGATGGTCCG 1842
Query 186665 GGCAGAGGTGGTACTTGTGATAGTTCTGGTTGGGATGCTTTCTATCTCTCTGTGTTCTGG 186724
|| ||||||||||||||| || ||| | |||||| || || ||| | | || ||||||
Sbjct 1841 GGACGAGGTGGTACTTGTGTTATTTCGGCTTGGGACGCATTTTATTTGGCAGTTTTCTGG 1782
Query 186725 G---CA-TTCAATACAATAGCATGGGCAGATTTTTATTGGCACTGGAAGAACCTTGCTAG 186780
|| || ||||| || | ||||| |||||||||||| ||||| || | |
Sbjct 1781 ATTCCAGTTAAATACTATTGGATGGGTTACTTTTTATTGGCATTGGAAACACATCACATT 1722
Query 186781 TTGGCAAGGTAATCAGGCACAATTCAATACATCAGGAACATATCTTATGGGTTGGTTCAG 186840
||||| ||||| | |||| || ||| ||| || ||| | ||||| ||||| ||
Sbjct 1721 ATGGCAGGGTAACCTTTCACAGTTTAATGAATCTTCCACTTATTTGATGGGATGGTTAAG 1662
Query 186841 AGATTATCTCTGGGCGAATAGTGCGCCTGTAATCACAGGGTACACACCATTTGGTATGAA 186900
||||||||| ||| || | | | | |||| || || | | |||||||||||
Sbjct 1661 AGATTATCTATGGTTAAACTCTTCACAACTTATCAATGGATATAACCMTTTTGGTATGAA 1602
Query 186901 TAATCTCTCTGTATGGGCATGGATGTTCTTGTTTGGTCATTTAGTTTGGGCAACAGGATT 186960
|| | | || || ||||||||||||||||| ||||| ||| | |||||||| ||| ||||
Sbjct 1601 TAGTTTATCAGTCTGGGCATGGATGTTCTTATTTGGGCATCTTGTTTGGGCTACAAGATT 1542
Query 186961 TATGTTCCTTATTTCTTGGAGAGGTTATTGGCAAGAGTTAATTGAGACTCTTGCTTGGGC 187020
||||||| | ||||| ||| | ||||||| ||| || || ||||| ||| | || |||||
Sbjct 1541 TATGTTCTTAATTTCCTGGTGTGGTTATTCGCAGGAATTGATTGAAACTTTAGCATGGGC 1482
Query 187021 ACATCAAAGAACTCCAATAGCAAATATAGCAGGTTGGAGAGATAAACCAGTGGCACTTTC 187080
||| || | || || | |||||| | | |||| |||||||||||| || |||||
Sbjct 1481 TCATGAACGCACACCTTTGGCAAATTTGATTCGCTGGAAAGATAAACCAGTAGCTCTTTC 1422
Query 187081 TATTGTTCAAGCAAGACTAGTTGGTTTATCACATTTTGCCATAGGATTTGTGCTTACCTA 187140
|| || ||||||||| | ||||| ||| | || | | | |||| | | | | || ||
Sbjct 1421 AATCGTGCAAGCAAGATTGGTTGGATTAGCTCACTATTCTGTAGGTTATATATTCACTTA 1362
Query 187141 TGCACCATTCCTGATAGCAACAACAGCAAGTAGATACGGTTA 187182
||| | ||| |||| || | ||| | | | || ||||||
Sbjct 1361 TGCGGCTTTCTTGATTGCCTCCACATCGGGCAAATTCGGTTA 1320
>seq1154
Length=260834
Score = 237 bits (262), Expect = 2e-57
Identities = 374/534 (70%), Gaps = 2/534 (0%)
Strand=Plus/Plus
Query 182847 TAGCAAAAGGACCTAAAACAACCACATGGATATGGAATTTACACGCAGATGCTCATGATT 182906
|||| || |||||| | || ||||| ||||| ||||| |||| || ||||||| ||||
Sbjct 120310 TAGCTAAGGGACCTGATACTACCACTTGGATCTGGAACCTACATGCTTATGCTCACGATT 120369
Query 182907 TTGATAAGCATTCTAGTGATCTGCAAGAGAATTCAAGAAAAATATTTGCTGCACACTTTG 182966
|||||| ||| | |||||| || | || | || ||||| ||||| ||| || || |
Sbjct 120370 TTGATAGTCATACCAGTGATTTGGAGGAAATCTCTCGAAAAGTATTTAGTGCCCATTTCG 120429
Query 182967 CTCATCTAGGTATCATCTTTGTATGGATGAGCAGTTTCTTCTTTCAAGGTGCTAGGTTTT 183026
|| || |||||| ||| | ||| |||| || | | || || |||||| | ||||
Sbjct 120430 GCCAACTCTATATCATATTTCTTTGGCTGAGTAGCATGTATTTCCATGGTGCTCGTTTTT 120489
Query 183027 CAAACTATACAGGATGGTTGGCAGACCCAACTCATGTAAAACCTGGTGCTCAAGTGGTTT 183086
| || |||| || |||| || || || ||||| | |||| || ||| |||||||
Sbjct 120490 CCAATTATAAAGCATGGCTGAGTGATCCTACTCACATTGGACCTAGTAATCAGGTGGTTT 120549
Query 183087 GGCCTATACTTGGTCAAGAGATATTGAATGGAGATCAGGGTGCAGGATATCAAGGTATTA 183146
||| ||| | || ||||| || ||||||||||| ||| | ||| | | ||| || |
Sbjct 120550 GGCTAATAGTGGGCCAAGAAATCCTGAATGGAGATGTGGGCGGAGGCTTCCGAGGAATAA 120609
Query 183147 GAATTACATCTGGTTTATTTCAGATGTGGAGAGCATGGGGTATAACAAATGAAACTCAAC 183206
||| || || || || |||||||| ||| |||||| || ||||| | |||| ||||
Sbjct 120610 AAATAACCTCAGGCTTTTTTCAGATTTGGCGAGCATCCGGAATAACTAGTGAATAACAAC 120669
Query 183207 -TAATGGCGCTAGCACTAGGTGCTTTAGTTATGGCAGCAGTTATGTTTAATGCTGGTGCA 183265
| || | | ||| |||| || || || | ||| | | ||| || |||||||
Sbjct 120670 TTTATTGTAC-CGCAATAGGCGCATTGGTCTTCGCATCCTTAATGCTTTTTGCTGGTTGG 120728
Query 183266 TTTCATTTTCACGTTGCTGCTCCTAAGTTATCATGGTTTCAGAATGTAGAATCTATGATG 183325
|| |||| |||| || ||||| || || | ||||| || |||||||||||||| ||
Sbjct 120729 TTCCATTATCACAAAGCAGCTCCAAAATTGGCTTGGTTCCAAGATGTAGAATCTATGTTG 120788
Query 183326 AATCATCACCTTGCAGGTTTGCTTGGTCTTGGTTCTTTAGGATGGGCAGGACAT 183379
||||| || | ||||| | || || ||||| || | |||| |||||||
Sbjct 120789 AATCACCATTTAGCAGGGCTACTAGGACTTGGGTCCCTTTCTTGGGMAGGACAT 120842
Score = 102 bits (112), Expect = 1e-16
Identities = 111/146 (76%), Gaps = 1/146 (1%)
Strand=Plus/Plus
Query 183615 ATCCTGTAACTGGCAGTCTTTGGATGACAGATATAGCACATCATCACCTAGCAATAGCAG 183674
|||| || ||||| |||| ||| | || ||||||||||||||||| |||| || |||
Sbjct 121042 ATCCAGTGACTGGGGGTCTATGGTTAACCGATATAGCACATCATCATTTAGCTATCGCAA 121101
Query 183675 TTATGTTTATCATTGCAGGTCATATGTATCGCACAAACTGGGGTATTGGTCAATCAATGA 183734
|| | || | || || |||||||||||| | || ||||||||||||||| | || |
Sbjct 121102 TTCTTTTCCTAATAGCGGGTCATATGTATAGGACCAACTGGGGTATTGGT-ATGGTATAA 121160
Query 183735 AAGAGATATTAGATGGTCAGAATGGT 183760
|||| || ||||| | ||| || |||
Sbjct 121161 AAGATATTTTAGAGGCTCATAAAGGT 121186
>seq1013
Length=1118043
Score = 89.7 bits (98), Expect = 6e-13
Identities = 98/129 (76%), Gaps = 6/129 (5%)
Strand=Plus/Plus
Query 183789 TATATGAATTTCTAGCAGAATCAAGACATGCACAACTATCACTGAATCTGGCAATGCTAG 183848
|||||||| ||||| || |||||| ||||| |||||||| ||||| || || ||| |||
Sbjct 1055475 TATATGAAATTCTAACAACATCAAGGCATGCTCAACTATCTCTGAACCTAGCTATGTTAG 1055534
Query 183849 GATCT---ATCAGTATCATAGTTTCACATCATATGTATGCAATGCCACCTTATCCATATC 183905
| ||| |||| | | ||| | || || |||||| | ||||| |||||||||||||
Sbjct 1055535 GCTCTTAAATCACTGTTGTAGCT---CACCAAATGTATTCCATGCCCCCTTATCCATATC 1055591
Query 183906 TTGGTATTG 183914
| | || ||
Sbjct 1055592 TAGCTACTG 1055600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 631409527931240
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