Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq716 96.9 3e-15
>seq716
Length=321914
Score = 96.9 bits (106), Expect = 3e-15
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 118489 TAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGA 118548
|| ||||||||||||||||| ||| || || |||||||| ||| | || ||||
Sbjct 10960 TACACATGAGCATCCCCAATAACATGGATAAAGTCACCAGGGACAAGATCACACACGTGA 11019
Query 118549 GCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATG 118608
|| |||||| | || | | | |||| || | ||| | || ||||| || |||||
Sbjct 11020 GCCATCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTATATGGCACACCAAGGCCCATA 11079
Query 118609 TCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664
|| ||||| | ||| |||| ||| || ||||| || || ||||| ||||| |||||
Sbjct 11080 TCCGCTGAACGCTGATACATTTGACATGAGAGTTCGCCTTTTGCCACATAGAACTG 11135
Score = 96.9 bits (106), Expect = 3e-15
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 118489 TAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGA 118548
|| ||||||||||||||||| ||| || || |||||||| ||| | || ||||
Sbjct 17657 TACACATGAGCATCCCCAATAACATGGATAAAATCACCAGGAACAAGATCACACACGTGA 17716
Query 118549 GCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATG 118608
|| | |||| | || | | | |||| || | ||||| || ||||| || |||||
Sbjct 17717 GCCAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAATGGCACACCAAGGCCCATA 17776
Query 118609 TCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664
|| ||||| | ||| |||| ||| || ||||| ||||| | ||| ||||| |||||
Sbjct 17777 TCCGCTGAACGCTGATACATTTGACATGAGAGTTCCCCTTCTGCCACATAGAACTG 17832
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414465489834796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |