Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq716 96.9 3e-15 >seq716 Length=321914 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 118489 TAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGA 118548 || ||||||||||||||||| ||| || || |||||||| ||| | || |||| Sbjct 10960 TACACATGAGCATCCCCAATAACATGGATAAAGTCACCAGGGACAAGATCACACACGTGA 11019 Query 118549 GCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATG 118608 || |||||| | || | | | |||| || | ||| | || ||||| || ||||| Sbjct 11020 GCCATCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTATATGGCACACCAAGGCCCATA 11079 Query 118609 TCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 || ||||| | ||| |||| ||| || ||||| || || ||||| ||||| ||||| Sbjct 11080 TCCGCTGAACGCTGATACATTTGACATGAGAGTTCGCCTTTTGCCACATAGAACTG 11135 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 118489 TAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGA 118548 || ||||||||||||||||| ||| || || |||||||| ||| | || |||| Sbjct 17657 TACACATGAGCATCCCCAATAACATGGATAAAATCACCAGGAACAAGATCACACACGTGA 17716 Query 118549 GCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATG 118608 || | |||| | || | | | |||| || | ||||| || ||||| || ||||| Sbjct 17717 GCCAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAATGGCACACCAAGGCCCATA 17776 Query 118609 TCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 || ||||| | ||| |||| ||| || ||||| ||||| | ||| ||||| ||||| Sbjct 17777 TCCGCTGAACGCTGATACATTTGACATGAGAGTTCCCCTTCTGCCACATAGAACTG 17832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414465489834796