Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq1891 93.3 3e-14
seq1013 89.7 4e-13
seq687 89.7 4e-13
seq507 89.7 4e-13
seq788 87.8 1e-12
seq530 87.8 1e-12
seq400 86.0 4e-12
seq1206 82.4 5e-11
>seq1891
Length=27579
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||||||||| |||||||| |||||||| || ||||| | || || || ||| |
Sbjct 11643 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 11584
Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
| || || ||||| ||||| ||| || || || |||||| |||| ||| |
Sbjct 11583 GACACCATTGACAAT--GTCAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCGGACC 11526
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| | || || || ||||| ||||| |||| || | || | |||| |||||||||
Sbjct 11525 AGCAGAGATTGATCTTCGCCGGTAAACAGCTGGAGGATGGTCGTACCTTGGCCGATTACA 11466
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999
| ||||| || || || | |||||||||
Sbjct 11465 ATATCCAGAAGGAATCAACACTCCATTTGGTT 11434
>seq1013
Length=1118043
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/232 (69%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--A 27844
|||||||| || || |||||||| || || ||||| || || | || || ||| |
Sbjct 384838 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGTTGAATCA 384779
Query 27845 GCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
|| || || ||||| || ||| || || ||||| ||||| | || ||
Sbjct 384778 TCAGACACAATCGACAAT--GTGAAAGCGAAGATTCAAGACAAGGAAGGAATCCCACCGG 384721
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| ||||||||||| || || ||||||||||||||||| |||| | | | | | ||||
Sbjct 384720 ATCAGCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCTGATT 384661
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||||| ||||| || | |||||||| | ||| || | || ||
Sbjct 384660 ACAACATCCAGAAAGAATCGACGCTTCATTTGGTGCTACGTCTGAGAGGAGG 384609
>seq687
Length=897029
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || || || || ||||||||||| || || || |||| ||||||||| |
Sbjct 267842 ATGCAGATCTTCGTCAAGACTCTTACTGGCAAGACCATAACTCTTGAGGTCGAAAGCTCT 267901
Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
| || || ||||| ||||| ||| || ||||| ||||| | ||| ||| |
Sbjct 267902 GACACAATTGACAAT--GTCAAGGCAAAGATCCAAGACAAGGAAGGAATCCCGCCGGACC 267959
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| | | || |||||||| |||||| | || |||| || | ||| | |||||||
Sbjct 267960 AGCAGAGACTTATCTTTGCCGGTAAACAACTTGAGGACGGTCGTACTTTGGCTGATTACA 268019
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999
| || ||||||||| || | || ||||||
Sbjct 268020 ATATTCAAAAAGAGTCAACCCTTCACTTGGTT 268051
>seq507
Length=413332
Score = 89.7 bits (98), Expect = 4e-13
Identities = 153/220 (70%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||||||||| |||||||| || ||||| || ||||| | || || || ||| |
Sbjct 378291 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 378350
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || ||||| || || ||| || ||||| |||||| |||| || |
Sbjct 378351 GACACCATCGACAAT--GTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCTGACC 378408
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||| | | || ||||| || ||||| | || || | || | ||| |||||||||
Sbjct 378409 AGCAAAGACTTATCTTTGCTGGGAAACAGCTTGAGGATGGTCGTACTTTGGCCGATTACA 378468
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007
||||||| ||||| ||| | || |||||| | |||||
Sbjct 378469 ACATCCAGAAAGAATCAACTCTCCACTTGGTTCTTCGTTT 378508
>seq788
Length=1574065
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| ||||||||||| ||||| || || || || || | || || || || |
Sbjct 100817 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCTTGGAGGTGGAGAGTTCA 100876
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || |||| || ||| || || || || |||||| | || ||| |
Sbjct 100877 GACACCATCGACAAC--GTGAAAGCCAAGATCCAGGATAAGGAAGGTATCCCTCCGGACC 100934
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| |||| || || |||||||| || ||||| |||| || | |||| | |||||||
Sbjct 100935 AGCAGAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGTACCTTGGCGGATTACA 100994
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| || ||| || | || ||||| |||||| | ||||| ||
Sbjct 100995 ACATCCAGAAGGAGTCGACCCTTCACTTGGTGTTGCGTCTCCGTGGAGG 101043
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|| || |||||| | || ||| ||||| |||| || || ||||||||||| |||||
Sbjct 108346 GATAAGGAAGGTATCCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAACAGTTGGAG 108405
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | || | |||| | |||||||||||||| || ||| || | || ||||| |||
Sbjct 108406 GATGGTCGTACCTTGGCGGATTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTGTTG 108465
Query 28003 CGTTTGCGTGGCGG 28016
||| | ||||| ||
Sbjct 108466 CGTCTCCGTGGAGG 108479
>seq530
Length=553347
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| |||||||| || || | || || || ||||| | || || || ||| |
Sbjct 260214 ATGCAGATTTTTGTCAAGACATTGACAGGAAAGACCATTACTTTGGAAGTGGAGAGCTCT 260273
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || ||||| |||||| || || |||||||| ||| |||| ||| |
Sbjct 260274 GACACCATCGACAAT--GTCAAAGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACC 260331
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| |||| || || |||||||| ||| | || || | | | ||| | |||||||
Sbjct 260332 AGCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTTTGGCTGATTACA 260391
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||| || || ||| |||| | || ||||| |||||| | ||||| ||
Sbjct 260392 ACATTCAGAAGGAGTCCACTCTTCACTTGGTCTTGCGTCTCCGTGGAGG 260440
>seq400
Length=13612
Score = 86.0 bits (94), Expect = 4e-12
Identities = 152/220 (69%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||||||||| || ||||| || || || | || || || ||| |
Sbjct 2273 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 2214
Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
| || || ||||| || || ||| || ||||| ||||| |||| ||| |
Sbjct 2213 GACACCATCGACAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACC 2156
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| | ||||| || ||||| ||||| | || || | || | |||| |||||||||
Sbjct 2155 AGCAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACA 2096
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007
| ||||| ||||| || | || |||||| | |||||
Sbjct 2095 ATATCCAGAAAGAATCAACCCTCCACTTGGTTCTCCGTTT 2056
>seq1206
Length=1516661
Score = 82.4 bits (90), Expect = 5e-11
Identities = 137/196 (70%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||| || || |||||||| || || ||||| || || |||| ||||| |
Sbjct 451600 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTTGAGGTCGAGTCC 451541
Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
| ||| || ||||| ||||| || || ||||| |||||| | || ||
Sbjct 451540 TCTGACACCATCGACAAT--GTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCGG 451483
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| ||||| || || ||||| |||||||| || | || |||| ||| | ||| ||||||
Sbjct 451482 ACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTACCTTAGCCGATT 451423
Query 27965 ACAACATCCAAAAAGA 27980
|||||||||| || ||
Sbjct 451422 ACAACATCCAGAAGGA 451407
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355852689293553
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |