Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1891 93.3 3e-14 seq1013 89.7 4e-13 seq687 89.7 4e-13 seq507 89.7 4e-13 seq788 87.8 1e-12 seq530 87.8 1e-12 seq400 86.0 4e-12 seq1206 82.4 5e-11 >seq1891 Length=27579 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| |||||||| || ||||| | || || || ||| | Sbjct 11643 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 11584 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| ||||| ||| || || || |||||| |||| ||| | Sbjct 11583 GACACCATTGACAAT--GTCAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCGGACC 11526 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || || ||||| ||||| |||| || | || | |||| ||||||||| Sbjct 11525 AGCAGAGATTGATCTTCGCCGGTAAACAGCTGGAGGATGGTCGTACCTTGGCCGATTACA 11466 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 | ||||| || || || | ||||||||| Sbjct 11465 ATATCCAGAAGGAATCAACACTCCATTTGGTT 11434 >seq1013 Length=1118043 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--A 27844 |||||||| || || |||||||| || || ||||| || || | || || ||| | Sbjct 384838 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGTTGAATCA 384779 Query 27845 GCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || || || ||||| || ||| || || ||||| ||||| | || || Sbjct 384778 TCAGACACAATCGACAAT--GTGAAAGCGAAGATTCAAGACAAGGAAGGAATCCCACCGG 384721 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||||||||| || || ||||||||||||||||| |||| | | | | | |||| Sbjct 384720 ATCAGCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCTGATT 384661 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||||| || | |||||||| | ||| || | || || Sbjct 384660 ACAACATCCAGAAAGAATCGACGCTTCATTTGGTGCTACGTCTGAGAGGAGG 384609 >seq687 Length=897029 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || ||||||||||| || || || |||| ||||||||| | Sbjct 267842 ATGCAGATCTTCGTCAAGACTCTTACTGGCAAGACCATAACTCTTGAGGTCGAAAGCTCT 267901 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| ||||| ||| || ||||| ||||| | ||| ||| | Sbjct 267902 GACACAATTGACAAT--GTCAAGGCAAAGATCCAAGACAAGGAAGGAATCCCGCCGGACC 267959 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | | || |||||||| |||||| | || |||| || | ||| | ||||||| Sbjct 267960 AGCAGAGACTTATCTTTGCCGGTAAACAACTTGAGGACGGTCGTACTTTGGCTGATTACA 268019 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 | || ||||||||| || | || |||||| Sbjct 268020 ATATTCAAAAAGAGTCAACCCTTCACTTGGTT 268051 >seq507 Length=413332 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| || ||||| || ||||| | || || || ||| | Sbjct 378291 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 378350 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||| || ||||| |||||| |||| || | Sbjct 378351 GACACCATCGACAAT--GTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCTGACC 378408 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | | || ||||| || ||||| | || || | || | ||| ||||||||| Sbjct 378409 AGCAAAGACTTATCTTTGCTGGGAAACAGCTTGAGGATGGTCGTACTTTGGCCGATTACA 378468 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 ||||||| ||||| ||| | || |||||| | ||||| Sbjct 378469 ACATCCAGAAAGAATCAACTCTCCACTTGGTTCTTCGTTT 378508 >seq788 Length=1574065 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| ||||| || || || || || | || || || || | Sbjct 100817 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCTTGGAGGTGGAGAGTTCA 100876 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || ||| || || || || |||||| | || ||| | Sbjct 100877 GACACCATCGACAAC--GTGAAAGCCAAGATCCAGGATAAGGAAGGTATCCCTCCGGACC 100934 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || || |||||||| || ||||| |||| || | |||| | ||||||| Sbjct 100935 AGCAGAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGTACCTTGGCGGATTACA 100994 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | || ||||| |||||| | ||||| || Sbjct 100995 ACATCCAGAAGGAGTCGACCCTTCACTTGGTGTTGCGTCTCCGTGGAGG 101043 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| | || ||| ||||| |||| || || ||||||||||| ||||| Sbjct 108346 GATAAGGAAGGTATCCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAACAGTTGGAG 108405 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||| | |||||||||||||| || ||| || | || ||||| ||| Sbjct 108406 GATGGTCGTACCTTGGCGGATTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTGTTG 108465 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 108466 CGTCTCCGTGGAGG 108479 >seq530 Length=553347 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || | || || || ||||| | || || || ||| | Sbjct 260214 ATGCAGATTTTTGTCAAGACATTGACAGGAAAGACCATTACTTTGGAAGTGGAGAGCTCT 260273 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| || || |||||||| ||| |||| ||| | Sbjct 260274 GACACCATCGACAAT--GTCAAAGCCAAGATTCAAGACAAAGAGGGTATTCCTCCGGACC 260331 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || || |||||||| ||| | || || | | | ||| | ||||||| Sbjct 260332 AGCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTTTGGCTGATTACA 260391 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| |||| | || ||||| |||||| | ||||| || Sbjct 260392 ACATTCAGAAGGAGTCCACTCTTCACTTGGTCTTGCGTCTCCGTGGAGG 260440 >seq400 Length=13612 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| || ||||| || || || | || || || ||| | Sbjct 2273 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 2214 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||| || ||||| ||||| |||| ||| | Sbjct 2213 GACACCATCGACAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACC 2156 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | ||||| || ||||| ||||| | || || | || | |||| ||||||||| Sbjct 2155 AGCAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACA 2096 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 | ||||| ||||| || | || |||||| | ||||| Sbjct 2095 ATATCCAGAAAGAATCAACCCTCCACTTGGTTCTCCGTTT 2056 >seq1206 Length=1516661 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || ||||| || || |||| ||||| | Sbjct 451600 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTTGAGGTCGAGTCC 451541 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || ||||| ||||| || || ||||| |||||| | || || Sbjct 451540 TCTGACACCATCGACAAT--GTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCGG 451483 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || || ||||| |||||||| || | || |||| ||| | ||| |||||| Sbjct 451482 ACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTACCTTAGCCGATT 451423 Query 27965 ACAACATCCAAAAAGA 27980 |||||||||| || || Sbjct 451422 ACAACATCCAGAAGGA 451407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355852689293553