Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq912 95.1 1e-14 seq507 89.7 4e-13 seq788 87.8 2e-12 seq895 86.0 5e-12 seq400 82.4 7e-11 >seq912 Length=1276171 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||||||| || || ||||||||| || || || || || Sbjct 751612 CCACCTCTGAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAGCC 751553 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 ||||| || | || || ||||| || || ||||| ||||| | ||||||||| |||||| Sbjct 751552 AGTGTGCGACCATCCTCTAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 751493 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTC 39233 | | |||||| ||| || || ||||| | | | || || |||| || Sbjct 751492 -ATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTC---TC 751437 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | ||||| |||| ||||| || || || |||||||||||||| Sbjct 751436 AACCTCTAGAGTGATTGTTTTACCCGTGAGAGTCTTCACAAAGATTTGCAT 751386 >seq507 Length=413332 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||||||| || ||| |||||| || ||||| || || || Sbjct 378745 CCACCTCTGAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATATTGTAGTCAGCG 378686 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 ||||| || | || ||||||||||| || || || ||||| | |||||||| ||||||| Sbjct 378685 AGTGTACGACCATCCTCAAGCTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCCGGTGGG 378626 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | |||||| || ||| || ||| | | | | || || ||| || Sbjct 378625 -ATTCCCTCTTTATCTTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAAC 378567 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| || |||| || || |||||||| ||||| Sbjct 378566 CTCGAGAGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 378519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/196 (71%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || ||||| ||||| |||||||| || | || ||||||||||| || || || Sbjct 379165 TCCTTCTGAATATTGTAATCCGCAAGTGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAG 379106 Query 39154 ATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCG 39211 || || | ||||||||| |||||| | || || |||||| ||| | | || |||| Sbjct 379105 ATGAGTCTCTGCTGGTCTGGTGGGATCCCT-TCCTTGTCC-TGAATCTTTGCCTTGACAT 379048 Query 39212 TCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTT 39268 | | | || || ||| ||| || |||| || || ||||||| || || || | Sbjct 379047 TATCGATTGTGTCTGAGCT---CTCAACCTCCAGAGTAATGGTTTTTCCGGTAAGGGTCT 378991 Query 39269 TAACAAAGATTTGCAT 39284 | |||||||||||||| Sbjct 378990 TCACAAAGATTTGCAT 378975 >seq788 Length=1574065 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||||||||||||| || || ||| || || || || || || || | |||| || Sbjct 100803 CGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCG 100744 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || ||||| || || || || || || | | ||||||||| | || | | ||||||| Sbjct 100743 TCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCTTTG 100684 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTG 39246 ||| ||| || ||||| | | | || || ||| |||||| |||| ||| Sbjct 100683 TCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCT---CTCCACCTCCAAAGTG 100627 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| | ||||| |||| ||| || || ||||||||||| Sbjct 100626 ATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 100589 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||||||||||||| || || ||| || || || || || || || | |||| || Sbjct 108239 CGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCG 108180 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || ||||| || || || || || || | | ||||||||| | || | | ||||||| Sbjct 108179 TCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCTTTG 108120 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTG 39246 ||| ||| || ||||| | | | || || ||| ||| || |||| ||| Sbjct 108119 TCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCT---CTCYACCTCCAAAGTG 108063 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| | ||||| |||| ||| || || ||||||||||| Sbjct 108062 ATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 108025 >seq895 Length=2238827 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| ||||| ||| || || || || || ||||| || || || |||| || Sbjct 1033409 ACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCC 1033468 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || || || || | |||||||||| ||||||| | | || ||||| Sbjct 1033469 AGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG-ATTCCTTCCTTGTCTTG 1033527 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| ||| ||| | | | | |||||| ||| || || || | || || | || Sbjct 1033528 GATCTTCGCTTTCACATTGTCGATGGTATCGGACGATTCAACCTCTAGGGTTATGGTCTT 1033587 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 ||||| || ||||| || ||||| ||||||||| Sbjct 1033588 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 1033621 >seq400 Length=13612 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||||||| || ||| |||||| || || || || || || Sbjct 1591 CCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCT 1650 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| || || ||||| ||||| | ||||||||| | || Sbjct 1651 AGGGTACGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 1710 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCC 39234 | | |||||| ||| || || ||||| | | | || || |||| || Sbjct 1711 ATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTC---TCA 1767 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | ||||| |||| || || || || || |||||||||||||| Sbjct 1768 ACCTCGAGGGTGATTGTTTTACCAGTGAGAGTCTTGACAAAGATTTGCAT 1817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429533878640207