Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq912 95.1 1e-14
seq507 89.7 4e-13
seq788 87.8 2e-12
seq895 86.0 5e-12
seq400 82.4 7e-11
>seq912
Length=1276171
Score = 95.1 bits (104), Expect = 1e-14
Identities = 162/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|| ||||| | || | ||||||||| || || ||||||||| || || || || ||
Sbjct 751612 CCACCTCTGAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAGCC 751553
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176
||||| || | || || ||||| || || ||||| ||||| | ||||||||| ||||||
Sbjct 751552 AGTGTGCGACCATCCTCTAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 751493
Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTC 39233
| | |||||| ||| || || ||||| | | | || || |||| ||
Sbjct 751492 -ATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTC---TC 751437
Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || | ||||| |||| ||||| || || || ||||||||||||||
Sbjct 751436 AACCTCTAGAGTGATTGTTTTACCCGTGAGAGTCTTCACAAAGATTTGCAT 751386
>seq507
Length=413332
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|| ||||| | || | ||||||||| || ||| |||||| || ||||| || || ||
Sbjct 378745 CCACCTCTGAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATATTGTAGTCAGCG 378686
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176
||||| || | || ||||||||||| || || || ||||| | |||||||| |||||||
Sbjct 378685 AGTGTACGACCATCCTCAAGCTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCCGGTGGG 378626
Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236
| | |||||| || ||| || ||| | | | | || || ||| ||
Sbjct 378625 -ATTCCCTCTTTATCTTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAAC 378567
Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| | ||||| |||| || |||| || || |||||||| |||||
Sbjct 378566 CTCGAGAGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 378519
Score = 84.2 bits (92), Expect = 2e-11
Identities = 140/196 (71%), Gaps = 10/196 (5%)
Strand=Plus/Minus
Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153
|| || || ||||| ||||| |||||||| || | || ||||||||||| || || ||
Sbjct 379165 TCCTTCTGAATATTGTAATCCGCAAGTGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAG 379106
Query 39154 ATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCG 39211
|| || | ||||||||| |||||| | || || |||||| ||| | | || ||||
Sbjct 379105 ATGAGTCTCTGCTGGTCTGGTGGGATCCCT-TCCTTGTCC-TGAATCTTTGCCTTGACAT 379048
Query 39212 TCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTT 39268
| | | || || ||| ||| || |||| || || ||||||| || || || |
Sbjct 379047 TATCGATTGTGTCTGAGCT---CTCAACCTCCAGAGTAATGGTTTTTCCGGTAAGGGTCT 378991
Query 39269 TAACAAAGATTTGCAT 39284
| ||||||||||||||
Sbjct 378990 TCACAAAGATTTGCAT 378975
>seq788
Length=1574065
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|||||||||||||| || || ||| || || || || || || || | |||| ||
Sbjct 100803 CGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCG 100744
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| ||||| || || || || || || | | ||||||||| | || | | |||||||
Sbjct 100743 TCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCTTTG 100684
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTG 39246
||| ||| || ||||| | | | || || ||| |||||| |||| |||
Sbjct 100683 TCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCT---CTCCACCTCCAAAGTG 100627
Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| | ||||| |||| ||| || || |||||||||||
Sbjct 100626 ATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 100589
Score = 86.0 bits (94), Expect = 5e-12
Identities = 150/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|||||||||||||| || || ||| || || || || || || || | |||| ||
Sbjct 108239 CGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCG 108180
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| ||||| || || || || || || | | ||||||||| | || | | |||||||
Sbjct 108179 TCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCTTTG 108120
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTG 39246
||| ||| || ||||| | | | || || ||| ||| || |||| |||
Sbjct 108119 TCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCT---CTCYACCTCCAAAGTG 108063
Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| | ||||| |||| ||| || || |||||||||||
Sbjct 108062 ATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 108025
>seq895
Length=2238827
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||| ||| ||||| ||| || || || || || ||||| || || || |||| ||
Sbjct 1033409 ACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCC 1033468
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCAT 39194
|||||||| || || || || | |||||||||| ||||||| | | || |||||
Sbjct 1033469 AGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG-ATTCCTTCCTTGTCTTG 1033527
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| ||| ||| | | | | |||||| ||| || || || | || || | ||
Sbjct 1033528 GATCTTCGCTTTCACATTGTCGATGGTATCGGACGATTCAACCTCTAGGGTTATGGTCTT 1033587
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288
||||| || ||||| || ||||| |||||||||
Sbjct 1033588 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 1033621
>seq400
Length=13612
Score = 82.4 bits (90), Expect = 7e-11
Identities = 157/230 (68%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|| ||||| | || | ||||||||| || ||| |||||| || || || || || ||
Sbjct 1591 CCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCT 1650
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || || | || || ||||| || || ||||| ||||| | ||||||||| | ||
Sbjct 1651 AGGGTACGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 1710
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCC 39234
| | |||||| ||| || || ||||| | | | || || |||| ||
Sbjct 1711 ATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTC---TCA 1767
Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || | ||||| |||| || || || || || ||||||||||||||
Sbjct 1768 ACCTCGAGGGTGATTGTTTTACCAGTGAGAGTCTTGACAAAGATTTGCAT 1817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429533878640207
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |