Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq687 84.2 2e-11 >seq687 Length=897029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||| || | ||| ||| | | |||| || ||||||||||||||||| ||| Sbjct 267840 CCACCTCTCAACCTAAGGGCCAAGTGGAGAATTGACTCCTTTTGAATATTGTAATCAGCC 267781 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| | ||| || | |||||| || ||| | ||||| | ||| ||||||| || Sbjct 267780 AAAGTACGGCCATCCTCGAGTTGTTTACCGGCAAAGATAAGTCGTTGCTGGTCTAGAGGA 267721 Query 101132 ACGCCTTCTTTGTC 101145 | ||||||||||| Sbjct 267720 ATCCCTTCTTTGTC 267707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409649621252901