Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 188 6e-43
>seq1432
Length=495105
Score = 188 bits (208), Expect = 6e-43
Identities = 378/556 (68%), Gaps = 16/556 (3%)
Strand=Plus/Minus
Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604
||||| || |||||||| || | |||||||||||| ||||| ||||||||| || ||
Sbjct 66076 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTG 66017
Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664
| ||| ||||||||||||| || || | ||| ||||| | ||| ||||| |||
Sbjct 66016 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAG 65957
Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--- 4721
||||| ||||| ||| ||||| ||||| | || | | ||| ||||||
Sbjct 65956 AATATACCTTCAACGCAAGCAAAAGCTACGATTC----TCTCAGCGA---AGCTTTGAGA 65904
Query 4722 -TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780
| || |||||||| | |||||| | ||||| ||| | || || |||||||| | ||
Sbjct 65903 TCCGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGAT 65844
Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840
||| ||| | | | | | || ||||| || |||||||| | || || ||
Sbjct 65843 TGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACT 65784
Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900
|||||| |||||||| ||||| || || || || || |||||||| ||| | ||||||
Sbjct 65783 ATACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTC 65724
Query 4901 TGTTACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCAC 4959
|| || ||||| ||| ||| |||| | | | || ||| || || |||||
Sbjct 65723 TGAGACCTGAACATCG-GACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTG 65665
Query 4960 TGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---T 5016
|| || || || || | || || || |||| ||||||| | ||| |
Sbjct 65664 ATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGT 65605
Query 5017 TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTT 5076
||| ||||| | | |||| || | ||| |||||||| | ||||| || |||||||
Sbjct 65604 TTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTT 65545
Query 5077 CCGCTTTTTTGTACAT 5092
| ||||| ||||||||
Sbjct 65544 CGGCTTTCTTGTACAT 65529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427037946750587
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |