Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1432 188 6e-43 >seq1432 Length=495105 Score = 188 bits (208), Expect = 6e-43 Identities = 378/556 (68%), Gaps = 16/556 (3%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| || |||||||| || | |||||||||||| ||||| ||||||||| || || Sbjct 66076 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTG 66017 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 | ||| ||||||||||||| || || | ||| ||||| | ||| ||||| ||| Sbjct 66016 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAG 65957 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--- 4721 ||||| ||||| ||| ||||| ||||| | || | | ||| |||||| Sbjct 65956 AATATACCTTCAACGCAAGCAAAAGCTACGATTC----TCTCAGCGA---AGCTTTGAGA 65904 Query 4722 -TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 | || |||||||| | |||||| | ||||| ||| | || || |||||||| | || Sbjct 65903 TCCGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGAT 65844 Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 ||| ||| | | | | | || ||||| || |||||||| | || || || Sbjct 65843 TGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACT 65784 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 |||||| |||||||| ||||| || || || || || |||||||| ||| | |||||| Sbjct 65783 ATACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTC 65724 Query 4901 TGTTACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCAC 4959 || || ||||| ||| ||| |||| | | | || ||| || || ||||| Sbjct 65723 TGAGACCTGAACATCG-GACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTG 65665 Query 4960 TGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---T 5016 || || || || || | || || || |||| ||||||| | ||| | Sbjct 65664 ATGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGT 65605 Query 5017 TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTT 5076 ||| ||||| | | |||| || | ||| |||||||| | ||||| || ||||||| Sbjct 65604 TTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTT 65545 Query 5077 CCGCTTTTTTGTACAT 5092 | ||||| |||||||| Sbjct 65544 CGGCTTTCTTGTACAT 65529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427037946750587