Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 264 2e-65
seq415 174 2e-38
seq778 105 9e-18
seq1009 100 4e-16
>seq1432
Length=495105
Score = 264 bits (292), Expect = 2e-65
Identities = 621/921 (67%), Gaps = 31/921 (3%)
Strand=Plus/Minus
Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908
||| ||||| ||||| || | ||||| ||||| |||||||| |||| | || ||
Sbjct 66365 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306
Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968
|||||| ||||||| |||||| || ||| | || | | || | | | |
Sbjct 66305 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 66246
Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028
| ||||| ||||| || || || || |||||| |||| |||||| || | |
Sbjct 66245 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCAA 66186
Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088
| || || || || || ||||||| ||||| || ||||| | ||
Sbjct 66185 GGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAACCGCATCACAAACAAT 66126
Query 48089 CGATGTTAC-CGTTT--CCTCA--CTTGGTGGATACAACAAATGTTTAAACATTAAACAT 48143
|||| | | |||| | ||| ||| || | || || | || | || |||||
Sbjct 66125 CGATTTCAAACGTTCTACATCAAGCTTAGT---TCTAAGAA--GACTATAGATCAAACAA 66071
Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203
|| |||||||| ||||||||||| ||||| ||| ||||||||||| |||||||| ||
Sbjct 66070 GCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCA 66011
Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATAT 48262
||||||| || ||||| || | ||| ||||| | | |||| | ||||| ||||||||
Sbjct 66010 GGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATAT 65952
Query 48263 GCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG---GCTTCGTTGTGTAT 48319
||||| ||| ||||| || | |||||| || | || | | ||||| ||
Sbjct 65951 ACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGTTG---AT 65895
Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379
||| |||||| || || |||||| | |||||||| |||||||| || || |||
Sbjct 65894 CCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAAA 65835
Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439
|||| | | | || ||| | ||||| | |||||| || | | ||||||||||| ||
Sbjct 65834 GAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTC 65775
Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499
|| |||||||| || ||||| || || |||||||| || | ||||||| || |||
Sbjct 65774 AGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGACCTG 65715
Query 48500 TACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAA 48558
|| | || ||| |||||| | | |||||| || ||||| || || || |
Sbjct 65714 AACAT-CGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGA 65656
Query 48559 AAAATGCTAATACATGTTTAATAAA---ATATTTTTCGTTGG-AAGTCAGTTTATTCCAG 48614
| || || | || ||||| || || | || ||||||| ||| ||||| | ||||
Sbjct 65655 AGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTT-TCCCAG 65597
Query 48615 TC---ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671
|| |||| |||| || | ||| |||||||| || ||||| || || || || |||
Sbjct 65596 TCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCT 65540
Query 48672 TTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGA 48731
|| || ||||| | ||| || | ||||||||||||||| ||| |||| || |||
Sbjct 65539 TTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGT 65480
Query 48732 TTTTTTGCAAGGATAGGTTCC 48752
|| || ||||| ||||||
Sbjct 65479 GTTGGTGTTAGGATTGGTTCC 65459
>seq415
Length=609146
Score = 174 bits (192), Expect = 2e-38
Identities = 287/408 (70%), Gaps = 11/408 (3%)
Strand=Plus/Plus
Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389
||||| | ||| |||||| || ||||| || ||||| || ||| ||||||| | |
Sbjct 100779 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 100838
Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449
|||| ||| ||||||| | || ||||| | | ||||||||||| || || || ||
Sbjct 100839 CTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCCGAATGGATG 100898
Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509
|||||||| || ||||| || ||||| ||| | ||| || | || || || | || |
Sbjct 100899 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACAT-CGGA 100957
Query 48510 CA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAA 48568
|| ||||| ||| | |||||| ||| ||||| || || || || || || |
Sbjct 100958 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCGAAGAAAGCGAG 101017
Query 48569 TACATGTTTAATAAAAT-ATTTT-----TCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622
|||||||| || || | | || |||||| || |||| | |||||| | |
Sbjct 101018 GACATGTTTGATGAAGTGACGTTCACCGTCGTTG--AGATTGTTT-TCCCAGTCGCGGTT 101074
Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682
|||| ||||| ||||||||||||||| ||||| |||||||| || |||||||| |||||
Sbjct 101075 GTCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTTTTGTACAT 101134
Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGG 48730
| ||| || | ||| || |||||||| ||| ||||| | |||
Sbjct 101135 TTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 101182
>seq778
Length=452071
Score = 105 bits (116), Expect = 9e-18
Identities = 156/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218
||||| || || | ||| | || || | ||| | || | || |||||||| ||||||
Sbjct 423150 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 423091
Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278
||||||||||||||||| ||| ||| || |||||| |||| || |||||| || ||
Sbjct 423090 TTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGAA 423031
Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338
| || || ||||| || || ||| | ||| || ||| | ||| ||||| ||
Sbjct 423030 ACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAATG 422971
Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379
||||| || || ||||| ||||| | ||||| |||||
Sbjct 422970 CCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 422930
Score = 91.5 bits (100), Expect = 2e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
||||||||| || || | || ||||||||||| || |||||| | | ||| | | ||
Sbjct 422802 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 422743
Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516
||| |||| || || || || ||||| | ||| || || || || || || | |||||
Sbjct 422742 GTAAGTTTGGATTGCAGAATCAATGTCTTCCTTG-TGGATACCAACAGCAACCCTCATCA 422684
Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576
||| || ||||| |||||||| | | | |||||| | ||| ||| | || |
Sbjct 422683 GCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAA 422624
Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610
||||||||| ||||| || | |||| ||| ||
Sbjct 422623 GAGTTTTAAATCCAAAGTAATCGTATTCAAAATC 422590
>seq1009
Length=3105692
Score = 100 bits (110), Expect = 4e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 77142 AATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 77201
|| ||||||||| ||||||| || |||||| ||||| | | |||||||||| || | |
Sbjct 1457283 AAGACTCTACGACTGTAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAGA 1457224
Query 77202 ATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 77261
|| || || |||||||||||||| |||||||||| | | |||||||| ||||
Sbjct 1457223 ATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACCAGAAGAGAATTTCTGATTCCATTC 1457164
Query 77262 GTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAA 77321
|| || |||| | ||| ||| ||||| | ||||| || | |||| |||
Sbjct 1457163 TTTGAAATCGTATCCCTGAGAGTAGCCCAGTCCCAGCGGTCTGATGGAATTACATTCCAC 1457104
Query 77322 AGATCGTATTGTAGAATTCC 77341
| ||| ||| ||||||||
Sbjct 1457103 ATATCAGGTTGAAGAATTCC 1457084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694649357956960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |