Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1432 264 2e-65 seq415 174 2e-38 seq778 105 9e-18 seq1009 100 4e-16 >seq1432 Length=495105 Score = 264 bits (292), Expect = 2e-65 Identities = 621/921 (67%), Gaps = 31/921 (3%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| ||||| ||||| || | ||||| ||||| |||||||| |||| | || || Sbjct 66365 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968 |||||| ||||||| |||||| || ||| | || | | || | | | | Sbjct 66305 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 66246 Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 | ||||| ||||| || || || || |||||| |||| |||||| || | | Sbjct 66245 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCAA 66186 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 | || || || || || ||||||| ||||| || ||||| | || Sbjct 66185 GGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAACCGCATCACAAACAAT 66126 Query 48089 CGATGTTAC-CGTTT--CCTCA--CTTGGTGGATACAACAAATGTTTAAACATTAAACAT 48143 |||| | | |||| | ||| ||| || | || || | || | || ||||| Sbjct 66125 CGATTTCAAACGTTCTACATCAAGCTTAGT---TCTAAGAA--GACTATAGATCAAACAA 66071 Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203 || |||||||| ||||||||||| ||||| ||| ||||||||||| |||||||| || Sbjct 66070 GCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCA 66011 Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATAT 48262 ||||||| || ||||| || | ||| ||||| | | |||| | ||||| |||||||| Sbjct 66010 GGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATAT 65952 Query 48263 GCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG---GCTTCGTTGTGTAT 48319 ||||| ||| ||||| || | |||||| || | || | | ||||| || Sbjct 65951 ACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGTTG---AT 65895 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 ||| |||||| || || |||||| | |||||||| |||||||| || || ||| Sbjct 65894 CCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAAA 65835 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 |||| | | | || ||| | ||||| | |||||| || | | ||||||||||| || Sbjct 65834 GAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTC 65775 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 || |||||||| || ||||| || || |||||||| || | ||||||| || ||| Sbjct 65774 AGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGACCTG 65715 Query 48500 TACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAA 48558 || | || ||| |||||| | | |||||| || ||||| || || || | Sbjct 65714 AACAT-CGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGA 65656 Query 48559 AAAATGCTAATACATGTTTAATAAA---ATATTTTTCGTTGG-AAGTCAGTTTATTCCAG 48614 | || || | || ||||| || || | || ||||||| ||| ||||| | |||| Sbjct 65655 AGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTT-TCCCAG 65597 Query 48615 TC---ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671 || |||| |||| || | ||| |||||||| || ||||| || || || || ||| Sbjct 65596 TCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCT 65540 Query 48672 TTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGA 48731 || || ||||| | ||| || | ||||||||||||||| ||| |||| || ||| Sbjct 65539 TTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGT 65480 Query 48732 TTTTTTGCAAGGATAGGTTCC 48752 || || ||||| |||||| Sbjct 65479 GTTGGTGTTAGGATTGGTTCC 65459 >seq415 Length=609146 Score = 174 bits (192), Expect = 2e-38 Identities = 287/408 (70%), Gaps = 11/408 (3%) Strand=Plus/Plus Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389 ||||| | ||| |||||| || ||||| || ||||| || ||| ||||||| | | Sbjct 100779 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 100838 Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 |||| ||| ||||||| | || ||||| | | ||||||||||| || || || || Sbjct 100839 CTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCCGAATGGATG 100898 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 |||||||| || ||||| || ||||| ||| | ||| || | || || || | || | Sbjct 100899 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACAT-CGGA 100957 Query 48510 CA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAA 48568 || ||||| ||| | |||||| ||| ||||| || || || || || || | Sbjct 100958 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCGAAGAAAGCGAG 101017 Query 48569 TACATGTTTAATAAAAT-ATTTT-----TCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 |||||||| || || | | || |||||| || |||| | |||||| | | Sbjct 101018 GACATGTTTGATGAAGTGACGTTCACCGTCGTTG--AGATTGTTT-TCCCAGTCGCGGTT 101074 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 |||| ||||| ||||||||||||||| ||||| |||||||| || |||||||| ||||| Sbjct 101075 GTCTTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTTTTGTACAT 101134 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGG 48730 | ||| || | ||| || |||||||| ||| ||||| | ||| Sbjct 101135 TTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 101182 >seq778 Length=452071 Score = 105 bits (116), Expect = 9e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||| | || || | ||| | || | || |||||||| |||||| Sbjct 423150 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 423091 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| ||| || |||||| |||| || |||||| || || Sbjct 423090 TTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGAA 423031 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || ||||| || || ||| | ||| || ||| | ||| ||||| || Sbjct 423030 ACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAATG 422971 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || || ||||| ||||| | ||||| ||||| Sbjct 422970 CCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 422930 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||||||||| || || | || ||||||||||| || |||||| | | ||| | | || Sbjct 422802 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 422743 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| |||| || || || || ||||| | ||| || || || || || || | ||||| Sbjct 422742 GTAAGTTTGGATTGCAGAATCAATGTCTTCCTTG-TGGATACCAACAGCAACCCTCATCA 422684 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| || ||||| |||||||| | | | |||||| | ||| ||| | || | Sbjct 422683 GCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAA 422624 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610 ||||||||| ||||| || | |||| ||| || Sbjct 422623 GAGTTTTAAATCCAAAGTAATCGTATTCAAAATC 422590 >seq1009 Length=3105692 Score = 100 bits (110), Expect = 4e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 77142 AATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 77201 || ||||||||| ||||||| || |||||| ||||| | | |||||||||| || | | Sbjct 1457283 AAGACTCTACGACTGTAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAGA 1457224 Query 77202 ATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 77261 || || || |||||||||||||| |||||||||| | | |||||||| |||| Sbjct 1457223 ATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACCAGAAGAGAATTTCTGATTCCATTC 1457164 Query 77262 GTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAA 77321 || || |||| | ||| ||| ||||| | ||||| || | |||| ||| Sbjct 1457163 TTTGAAATCGTATCCCTGAGAGTAGCCCAGTCCCAGCGGTCTGATGGAATTACATTCCAC 1457104 Query 77322 AGATCGTATTGTAGAATTCC 77341 | ||| ||| |||||||| Sbjct 1457103 ATATCAGGTTGAAGAATTCC 1457084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694649357956960