Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 219 6e-52
seq415 149 9e-31
seq1009 113 6e-20
seq778 91.5 2e-13
seq1163 86.0 9e-12
>seq1432
Length=495105
Score = 219 bits (242), Expect = 6e-52
Identities = 608/917 (66%), Gaps = 23/917 (3%)
Strand=Plus/Minus
Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397
||| || || ||||| || | ||||| ||||| |||||||| |||| | || ||
Sbjct 66365 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306
Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457
|||||| ||||||| |||||| | ||| ||| | || | | || | | | |
Sbjct 66305 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 66246
Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517
| ||||| ||||| || || || ||| |||||| |||| |||||| || | |
Sbjct 66245 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCAA 66186
Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577
|| || || || || ||||||| || || || ||||| | | ||
Sbjct 66185 GGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAACCGCATCACAAACAAT 66126
Query 46578 CGATGTTACTGTTTCCTCA-CTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAA 46636
|||| | | ||| || | | | | | | | | | || | || ||||| || |
Sbjct 66125 CGATTTCAAACGTTCTACATCAAGCTTAGTTC-TAAGAAGACTATAGATCAAACAAGCGA 66067
Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA 46696
||||||| ||||| ||||| ||||| ||| ||||||||||| |||||||| |||||||
Sbjct 66066 AATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCA 66007
Query 46697 TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCT 46755
||| || || || || | ||| ||||| | | |||| | ||||| |||||||| |||
Sbjct 66006 TTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCAGAGAAGAATATACCT 65948
Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC--TGGCATCATTATGAATCCACC 46813
|| || || || || || | |||||| || | | || ||| | || |||||
Sbjct 65947 TCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGT-TG-ATCCA-- 65892
Query 46814 TTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871
||| | ||||| || || || ||| | |||||||| |||||||| || || ||||||
Sbjct 65891 TTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAAAGAG 65832
Query 46872 AAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGA 46931
| | | | || | | ||||| | || || || | | ||||||||||| || ||
Sbjct 65831 ATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 65772
Query 46932 ATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTAC 46991
|||||| || || || || || || |||||||| || | ||||| | | ||| ||
Sbjct 65771 ATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGACCTGAAC 65712
Query 46992 CTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAA 47050
|| | ||| |||||| || | |||||| || ||||| || || || || |
Sbjct 65711 ATC-GGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGAAGA 65653
Query 47051 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT---TTATTCCAGTC-- 47105
| || | || ||||| || || | ||| ||| | || ||| || | ||||||
Sbjct 65652 AGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAGTCGC 65593
Query 47106 -ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTT 47164
|||| |||| || | ||| |||||||| || |||||||| ||||| || ||||| |
Sbjct 65592 GATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCT 65536
Query 47165 TATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224
| ||||| | ||| || | | |||||||| || || ||| |||| || ||| ||
Sbjct 65535 TGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTTG 65476
Query 47225 TTGCAAGTATAGGTTCC 47241
|| || || ||||||
Sbjct 65475 GTGTTAGGATTGGTTCC 65459
>seq415
Length=609146
Score = 149 bits (164), Expect = 9e-31
Identities = 279/405 (69%), Gaps = 5/405 (1%)
Strand=Plus/Plus
Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878
||||| | ||| || ||| || ||||| || ||||| || ||| ||||||| | |
Sbjct 100779 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 100838
Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938
|||| | ||||||| | ||| ||||| | | ||||||||||| || ||||| |||
Sbjct 100839 CTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCCGAATGGATG 100898
Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998
|||||||| || ||||| || ||||| ||| | || || | | || || || | |
Sbjct 100899 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 100957
Query 46999 CA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAA 47057
|| ||||| || | |||||| || ||||| || || || || || || |
Sbjct 100958 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCGAAGAAAGCGAG 101017
Query 47058 TACATGTTTAATAAAATATTTTTCATCG--GTAGTCAGT-TTATTCCAGTCATTGATATC 47114
|||||||| || || | |||| || || | | | || | |||||| | | ||
Sbjct 101018 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAGTCGCGGTTGTC 101077
Query 47115 TTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATT 47174
|| ||||| ||||||||||||||| ||||||||||| || || |||||||| ||||| |
Sbjct 101078 TTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTTTTGTACATTTC 101137
Query 47175 CCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGG 47219
||| || | | || || || || || ||| ||||| | |||
Sbjct 101138 CCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 101182
>seq1009
Length=3105692
Score = 113 bits (124), Expect = 6e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813
||||| || || | ||| | ||||| | ||| | || | || |||||||| ||| ||
Sbjct 1455502 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACCA 1455443
Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873
||||||| ||||| || ||| ||| || |||||| |||||| || || || ||
Sbjct 1455442 TTAGATGCTCCATTGGTACCACGAATGTAGCTTCCAGTTGCACGGATGTTGTGAACTGAA 1455383
Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933
| || || || || ||| ||| || | |||||| ||||||||||||||| ||
Sbjct 1455382 ACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATATC 1455323
Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975
||||| || ||||||||| ||||| | ||||| ||||||
Sbjct 1455322 CCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 1455281
Score = 100 bits (110), Expect = 4e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 75737 AATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 75796
|| ||||| ||| ||||||| || |||||| ||||| | | |||||||||| || | |
Sbjct 1457283 AAGACTCTACGACTGTAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAGA 1457224
Query 75797 ATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 75856
|| || ||||||||||| ||||| |||||||||| | | |||||||| ||||
Sbjct 1457223 ATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACCAGAAGAGAATTTCTGATTCCATTC 1457164
Query 75857 GTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAG 75916
|| || |||| | ||| ||| ||||| | |||||||| | |||| |||
Sbjct 1457163 TTTGAAATCGTATCCCTGAGAGTAGCCCAGTCCCAGCGGTCTGATGGAATTACATTCCAC 1457104
Query 75917 AGATCGTATTGTAGAATTCC 75936
| ||| ||| ||||||||
Sbjct 1457103 ATATCAGGTTGAAGAATTCC 1457084
>seq778
Length=452071
Score = 91.5 bits (100), Expect = 2e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052
||||||||| || || | |||||||||||||||||||||||| | | ||| | | ||
Sbjct 422802 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 422743
Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111
||| |||| || | | || || || | ||| || || || ||||| || | |||||
Sbjct 422742 GTAAGTTTGGATTGCAGAATCAATGTCTTCCTTG-TGGATACCAACAGCAACCCTCATCA 422684
Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171
||| || ||||| | ||| ||| | | | |||||| | ||| ||| | || |
Sbjct 422683 GCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAA 422624
Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205
||||||||| ||||| || | |||| ||| ||
Sbjct 422623 GAGTTTTAAATCCAAAGTAATCGTATTCAAAATC 422590
>seq1163
Length=414626
Score = 86.0 bits (94), Expect = 9e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551
|||||||||||| | ||| |||| | |||||||| ||||| ||| |||||||
Sbjct 26483 CTCTCTTTCATACTTTGTGTATAGTCTCTCAAATTCTGTGCCCCAGCAATCTGCCAAACC 26542
Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611
||| |||||| ||||| | || |||||||| ||||| | || || | | ||| ||
Sbjct 26543 TGGAGCTTCATTAGGACAAAACAGTGACCACTTCCCATCATGTTTGACTCTCTCCATGAA 26602
Query 76612 GAGATCAGGTATCCATAGAGCAATA 76636
||||| || ||||| ||||| |||
Sbjct 26603 AAGATCTGGAATCCAGAGAGCTATA 26627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712914446748480
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