Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1432 219 6e-52 seq415 149 9e-31 seq1009 113 6e-20 seq778 91.5 2e-13 seq1163 86.0 9e-12 >seq1432 Length=495105 Score = 219 bits (242), Expect = 6e-52 Identities = 608/917 (66%), Gaps = 23/917 (3%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || ||||| || | ||||| ||||| |||||||| |||| | || || Sbjct 66365 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 66306 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 |||||| ||||||| |||||| | ||| ||| | || | | || | | | | Sbjct 66305 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 66246 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 | ||||| ||||| || || || ||| |||||| |||| |||||| || | | Sbjct 66245 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAATCACGATTCATACCAACCAA 66186 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 || || || || || ||||||| || || || ||||| | | || Sbjct 66185 GGCACAAGGAAGCGCGTCGCAAACAAACTCTCTCTCGATCTCAACCGCATCACAAACAAT 66126 Query 46578 CGATGTTACTGTTTCCTCA-CTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAA 46636 |||| | | ||| || | | | | | | | | | || | || ||||| || | Sbjct 66125 CGATTTCAAACGTTCTACATCAAGCTTAGTTC-TAAGAAGACTATAGATCAAACAAGCGA 66067 Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA 46696 ||||||| ||||| ||||| ||||| ||| ||||||||||| |||||||| ||||||| Sbjct 66066 AATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCA 66007 Query 46697 TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCT 46755 ||| || || || || | ||| ||||| | | |||| | ||||| |||||||| ||| Sbjct 66006 TTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCAGAGAAGAATATACCT 65948 Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC--TGGCATCATTATGAATCCACC 46813 || || || || || || | |||||| || | | || ||| | || ||||| Sbjct 65947 TCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGT-TG-ATCCA-- 65892 Query 46814 TTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 ||| | ||||| || || || ||| | |||||||| |||||||| || || |||||| Sbjct 65891 TTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTGCGCGAAAGAG 65832 Query 46872 AAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGA 46931 | | | | || | | ||||| | || || || | | ||||||||||| || || Sbjct 65831 ATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 65772 Query 46932 ATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTAC 46991 |||||| || || || || || || |||||||| || | ||||| | | ||| || Sbjct 65771 ATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGACCTGAAC 65712 Query 46992 CTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAA 47050 || | ||| |||||| || | |||||| || ||||| || || || || | Sbjct 65711 ATC-GGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCGAAGA 65653 Query 47051 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT---TTATTCCAGTC-- 47105 | || | || ||||| || || | ||| ||| | || ||| || | |||||| Sbjct 65652 AGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAGTCGC 65593 Query 47106 -ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTT 47164 |||| |||| || | ||| |||||||| || |||||||| ||||| || ||||| | Sbjct 65592 GATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCT 65536 Query 47165 TATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 | ||||| | ||| || | | |||||||| || || ||| |||| || ||| || Sbjct 65535 TGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTTG 65476 Query 47225 TTGCAAGTATAGGTTCC 47241 || || || |||||| Sbjct 65475 GTGTTAGGATTGGTTCC 65459 >seq415 Length=609146 Score = 149 bits (164), Expect = 9e-31 Identities = 279/405 (69%), Gaps = 5/405 (1%) Strand=Plus/Plus Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878 ||||| | ||| || ||| || ||||| || ||||| || ||| ||||||| | | Sbjct 100779 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 100838 Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938 |||| | ||||||| | ||| ||||| | | ||||||||||| || ||||| ||| Sbjct 100839 CTTTCTTTGTTATCTTTGATATACGTATCGAGAAGGAGACTATACATCTCCGAATGGATG 100898 Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998 |||||||| || ||||| || ||||| ||| | || || | | || || || | | Sbjct 100899 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 100957 Query 46999 CA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAA 47057 || ||||| || | |||||| || ||||| || || || || || || | Sbjct 100958 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCGGATGCGGCGAAGAAAGCGAG 101017 Query 47058 TACATGTTTAATAAAATATTTTTCATCG--GTAGTCAGT-TTATTCCAGTCATTGATATC 47114 |||||||| || || | |||| || || | | | || | |||||| | | || Sbjct 101018 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAGTCGCGGTTGTC 101077 Query 47115 TTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATT 47174 || ||||| ||||||||||||||| ||||||||||| || || |||||||| ||||| | Sbjct 101078 TTGTGATAGATCTACTTCTTCAGCGGTCCAGAATGATGCTTCGGCTTTTTTGTACATTTC 101137 Query 47175 CCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGG 47219 ||| || | | || || || || || ||| ||||| | ||| Sbjct 101138 CCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 101182 >seq1009 Length=3105692 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||| | ||||| | ||| | || | || |||||||| ||| || Sbjct 1455502 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACCA 1455443 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||||| ||||| || ||| ||| || |||||| |||||| || || || || Sbjct 1455442 TTAGATGCTCCATTGGTACCACGAATGTAGCTTCCAGTTGCACGGATGTTGTGAACTGAA 1455383 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || ||| ||| || | |||||| ||||||||||||||| || Sbjct 1455382 ACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATATC 1455323 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| || ||||||||| ||||| | ||||| |||||| Sbjct 1455322 CCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 1455281 Score = 100 bits (110), Expect = 4e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 75737 AATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 75796 || ||||| ||| ||||||| || |||||| ||||| | | |||||||||| || | | Sbjct 1457283 AAGACTCTACGACTGTAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAGA 1457224 Query 75797 ATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 75856 || || ||||||||||| ||||| |||||||||| | | |||||||| |||| Sbjct 1457223 ATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCCACCAGAAGAGAATTTCTGATTCCATTC 1457164 Query 75857 GTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAG 75916 || || |||| | ||| ||| ||||| | |||||||| | |||| ||| Sbjct 1457163 TTTGAAATCGTATCCCTGAGAGTAGCCCAGTCCCAGCGGTCTGATGGAATTACATTCCAC 1457104 Query 75917 AGATCGTATTGTAGAATTCC 75936 | ||| ||| |||||||| Sbjct 1457103 ATATCAGGTTGAAGAATTCC 1457084 >seq778 Length=452071 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||||||||| || || | |||||||||||||||||||||||| | | ||| | | || Sbjct 422802 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 422743 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| |||| || | | || || || | ||| || || || ||||| || | ||||| Sbjct 422742 GTAAGTTTGGATTGCAGAATCAATGTCTTCCTTG-TGGATACCAACAGCAACCCTCATCA 422684 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || ||||| | ||| ||| | | | |||||| | ||| ||| | || | Sbjct 422683 GCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAA 422624 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 ||||||||| ||||| || | |||| ||| || Sbjct 422623 GAGTTTTAAATCCAAAGTAATCGTATTCAAAATC 422590 >seq1163 Length=414626 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||| | ||| |||| | |||||||| ||||| ||| ||||||| Sbjct 26483 CTCTCTTTCATACTTTGTGTATAGTCTCTCAAATTCTGTGCCCCAGCAATCTGCCAAACC 26542 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| |||||| ||||| | || |||||||| ||||| | || || | | ||| || Sbjct 26543 TGGAGCTTCATTAGGACAAAACAGTGACCACTTCCCATCATGTTTGACTCTCTCCATGAA 26602 Query 76612 GAGATCAGGTATCCATAGAGCAATA 76636 ||||| || ||||| ||||| ||| Sbjct 26603 AAGATCTGGAATCCAGAGAGCTATA 26627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712914446748480