Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq1027 84.2 2e-11 >seq1027 Length=9901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 ||||||||| || ||| | || ||||| ||||||||||| || | ||| | || Sbjct 6561 GTGTGAAGAAGATGTCTACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCGTA 6620 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||||| || |||| || ||||| || ||| ||||||||||| || | || Sbjct 6621 CTCATGCCGTGCCGGTTCTTGCTCAAGTTGCGCCGGGAAAGTCGTCTCTGGCTCCATTGA 6680 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAAT 161694 ||| || ||| |||| | ||||||||||| || Sbjct 6681 CCAGTCGGAACAGAGCTTCTTAGACGATGACCAGAT 6716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557638792647480