Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq980 86.0 5e-12 seq400 86.0 5e-12 seq1780 84.2 2e-11 >seq980 Length=1630315 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||| || |||||||| ||||||||||| || |||| ||| Sbjct 2850 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATCACTTTGGAGGTTGAAAGTTCT 2791 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| || ||| || ||||| || |||| ||||| Sbjct 2790 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAAGAGGGAATTCCTCCGGATCAG 2731 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || |||||||| | ||| || || || | || || | || | || ||||| ||| Sbjct 2730 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 2671 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| ||||| || ||||| ||| | ||||| | ||||| Sbjct 2670 ATCCAGAAAGAGTCTACCCTCCATTTGGTGCTTCGTCTCAGAGGTGG 2624 >seq400 Length=13612 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || |||||||| || |||| ||||| |||||||| ||||| || | Sbjct 2045 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 1986 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | | || ||| ||| ||| ||||||||||| | || || || Sbjct 1985 GACACTATTGACAACGTCAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 1926 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || |||||||| | ||| || || || | || ||| | ||| | || || || || Sbjct 1925 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGAAGGACTCTTGCTGACTACAAC 1866 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || || ||||| ||||| ||| | ||||| || ||||| Sbjct 1865 ATCCAGAAGGAGTCGACACTTCATTTGGTGCTTCGTCTTCGTGGTGG 1819 >seq1780 Length=424430 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || |||||||| || ||||| || || ||||| || | ||| |||| | Sbjct 97000 ATGCAGATATTTGTCAAGACTTTGACGGGAAAGACCATCACGCTTGAAGTGGAAAGCTCT 96941 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111218 ||| | ||| | | || || ||| ||| ||||||||||| | |||| | ||||| Sbjct 96940 GATACCATTGACAATGTGAAGGCAAAGATTCAGGACAAAGAAGG-GATCCCACCGGATCA 96882 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || ||||| || | ||| || || || | |||||| | ||| | || ||||| || Sbjct 96881 GCAGAGGCTAATCTTTGCCGGGAAGCAGCTTGAAGATGGTCGCACTTTAGCGGATTACAA 96822 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| || || || || | || | ||||| |||||||| Sbjct 96821 CATCCAGAAAGAGTCAACTCTTCACCTTGTTCTCCGTCTCCGCGGTGG 96774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421799689695064