Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_031761.1
Length=131855
Score E
Sequences producing significant alignments: (Bits) Value
seq980 86.0 5e-12
seq400 86.0 5e-12
seq1780 84.2 2e-11
>seq980
Length=1630315
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| |||||||| || |||||||| ||||||||||| || |||| |||
Sbjct 2850 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATCACTTTGGAGGTTGAAAGTTCT 2791
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| || ||| | || ||| || ||| || ||||| || |||| |||||
Sbjct 2790 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAAGAGGGAATTCCTCCGGATCAG 2731
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| |||||||| | ||| || || || | || || | || | || ||||| |||
Sbjct 2730 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 2671
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| || ||||| ||||| || ||||| ||| | ||||| | |||||
Sbjct 2670 ATCCAGAAAGAGTCTACCCTCCATTTGGTGCTTCGTCTCAGAGGTGG 2624
>seq400
Length=13612
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| || |||||||| || |||| ||||| |||||||| ||||| || |
Sbjct 2045 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATTACTTTGGAAGTTGAGAGCTCT 1986
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
|| || ||| | | || ||| ||| ||| ||||||||||| | || || ||
Sbjct 1985 GACACTATTGACAACGTCAAAGCAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 1926
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| |||||||| | ||| || || || | || ||| | ||| | || || || ||
Sbjct 1925 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGAAGGACTCTTGCTGACTACAAC 1866
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| || || || || ||||| ||||| ||| | ||||| || |||||
Sbjct 1865 ATCCAGAAGGAGTCGACACTTCATTTGGTGCTTCGTCTTCGTGGTGG 1819
>seq1780
Length=424430
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| || |||||||| || ||||| || || ||||| || | ||| |||| |
Sbjct 97000 ATGCAGATATTTGTCAAGACTTTGACGGGAAAGACCATCACGCTTGAAGTGGAAAGCTCT 96941
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111218
||| | ||| | | || || ||| ||| ||||||||||| | |||| | |||||
Sbjct 96940 GATACCATTGACAATGTGAAGGCAAAGATTCAGGACAAAGAAGG-GATCCCACCGGATCA 96882
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
|| ||||| || | ||| || || || | |||||| | ||| | || ||||| ||
Sbjct 96881 GCAGAGGCTAATCTTTGCCGGGAAGCAGCTTGAAGATGGTCGCACTTTAGCGGATTACAA 96822
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| || ||||| || || || || | || | ||||| ||||||||
Sbjct 96821 CATCCAGAAAGAGTCAACTCTTCACCTTGTTCTCCGTCTCCGCGGTGG 96774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421799689695064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |