Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq1027 86.0 7e-12 >seq1027 Length=9901 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 167432 GTGTGCAGATGATCAATACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTA 167491 ||||| ||| ||| ||| |||| ||||| ||||||||||| || | ||| | || Sbjct 6561 GTGTGAAGAAGATGTCTACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCGTA 6620 Query 167492 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGA 167551 ||| |||||||| || |||| || ||||| || ||| || |||||||| || | || Sbjct 6621 CTCATGCCGTGCCGGTTCTTGCTCAAGTTGCGCCGGGAAAGTCGTCTCTGGCTCCATTGA 6680 Query 167552 TCAAAGCGATCAATCCTTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTG 167611 || || || |||| | |||||||| || || |||||| | | | ||||| Sbjct 6681 CCAGTCGGAACAGAGCTTCTTAGACGATGACCAGATGAGCGAAGGCTATGTCTTGACCTG 6740 Query 167612 TGTGTCCTATCCAAC 167626 |||| | ||||| || Sbjct 6741 TGTGGCTTATCCGAC 6755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592181825847280