Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_031944.1
Length=185102
Score E
Sequences producing significant alignments: (Bits) Value
seq1027 86.0 7e-12
>seq1027
Length=9901
Score = 86.0 bits (94), Expect = 7e-12
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 167432 GTGTGCAGATGATCAATACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTA 167491
||||| ||| ||| ||| |||| ||||| ||||||||||| || | ||| | ||
Sbjct 6561 GTGTGAAGAAGATGTCTACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCGTA 6620
Query 167492 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGA 167551
||| |||||||| || |||| || ||||| || ||| || |||||||| || | ||
Sbjct 6621 CTCATGCCGTGCCGGTTCTTGCTCAAGTTGCGCCGGGAAAGTCGTCTCTGGCTCCATTGA 6680
Query 167552 TCAAAGCGATCAATCCTTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTG 167611
|| || || |||| | |||||||| || || |||||| | | | |||||
Sbjct 6681 CCAGTCGGAACAGAGCTTCTTAGACGATGACCAGATGAGCGAAGGCTATGTCTTGACCTG 6740
Query 167612 TGTGTCCTATCCAAC 167626
|||| | ||||| ||
Sbjct 6741 TGTGGCTTATCCGAC 6755
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592181825847280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |