Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq1432 152 5e-32
>seq1432
Length=495105
Score = 152 bits (168), Expect = 5e-32
Identities = 354/529 (67%), Gaps = 10/529 (2%)
Strand=Plus/Minus
Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565
||||| || |||||||| || || ||||| || || ||||||||| ||||| |||||
Sbjct 66076 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTG 66017
Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAA 23624
| ||| |||||||| |||||||| || | ||| ||||| | | |||| | | || || ||
Sbjct 66016 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAA 65958
Query 23625 GAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATC 23684
||| ||||| ||||| ||||| || || | | | | || || || |||
Sbjct 65957 GAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAGATC 65902
Query 23685 AGAA-ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTG 23743
| |||||||| ||| ||| | || ||| | ||||| ||||||||| ||||
Sbjct 65901 CGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTG 65842
Query 23744 CTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTAT 23803
| |||||| | | | |||| || ||| | || || || || | || | |||||
Sbjct 65841 CGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTAT 65782
Query 23804 ACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAG 23863
|||| |||||||||||||| || || || || || || || || || | |||||| |
Sbjct 65781 ACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTG 65722
Query 23864 ACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAG 23923
| | |||||||| | |||| | | | | ||| ||| ||| || || || |
Sbjct 65721 AGACCTGAACATCGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATG 65662
Query 23924 CAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC---AGTTGATAATTTTT 23980
| || ||||| || || || | ||| || || || | ||| || ||| | | ||||
Sbjct 65661 CGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTT 65602
Query 23981 TCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029
||| || | | |||| || | ||| ||||| || | ||||| ||
Sbjct 65601 CCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAA 65553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521473404854600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |