Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1432 152 5e-32 >seq1432 Length=495105 Score = 152 bits (168), Expect = 5e-32 Identities = 354/529 (67%), Gaps = 10/529 (2%) Strand=Plus/Minus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 ||||| || |||||||| || || ||||| || || ||||||||| ||||| ||||| Sbjct 66076 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTG 66017 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAA 23624 | ||| |||||||| |||||||| || | ||| ||||| | | |||| | | || || || Sbjct 66016 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAA 65958 Query 23625 GAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATC 23684 ||| ||||| ||||| ||||| || || | | | | || || || ||| Sbjct 65957 GAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAGATC 65902 Query 23685 AGAA-ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTG 23743 | |||||||| ||| ||| | || ||| | ||||| ||||||||| |||| Sbjct 65901 CGTTGATCCATTTCATTGCCCATTCTGCTTTCTTCGTCACACAAGGAATTGTTTCGATTG 65842 Query 23744 CTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTAT 23803 | |||||| | | | |||| || ||| | || || || || | || | ||||| Sbjct 65841 CGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTAT 65782 Query 23804 ACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAG 23863 |||| |||||||||||||| || || || || || || || || || | |||||| | Sbjct 65781 ACATCTCAGAATGAATATTCTCGATTGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTG 65722 Query 23864 ACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAG 23923 | | |||||||| | |||| | | | | ||| ||| ||| || || || | Sbjct 65721 AGACCTGAACATCGGACATGAATCGTGTTGAGAGATTCTCGAGAACGATTCCGTCTGATG 65662 Query 23924 CAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC---AGTTGATAATTTTT 23980 | || ||||| || || || | ||| || || || | ||| || ||| | | |||| Sbjct 65661 CGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTT 65602 Query 23981 TCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 ||| || | | |||| || | ||| ||||| || | ||||| || Sbjct 65601 CCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAA 65553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521473404854600