Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 105 1e-17 seq7 102 2e-16 seq5 100 6e-16 seq3 98.7 2e-15 seq1 98.7 2e-15 seq4 95.1 3e-14 >seq6 Length=25113588 Score = 105 bits (116), Expect = 1e-17 Identities = 74/83 (89%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 165700 TAAAACGCTT-GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCG 165758 |||||| ||| |||||||||||||||| |||||||||| || || |||| || ||||||| Sbjct 21832629 TAAAACACTTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCG 21832688 Query 165759 TGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||| ||||| Sbjct 21832689 TGGGTTCGAGCCCCACGGTGGGC 21832711 Score = 100 bits (110), Expect = 6e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 |||| | |||||||||||||||| |||||||||| || || |||| || |||||||||| Sbjct 596128 AAACAATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 596069 Query 165762 GTTCGAGCCCCACGATGGGC 165781 |||||||||||||| ||||| Sbjct 596068 GTTCGAGCCCCACGGTGGGC 596049 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 25052045 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 25051986 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 25051985 CCCACGGTGGGC 25051974 >seq7 Length=24649197 Score = 102 bits (112), Expect = 2e-16 Identities = 575/894 (64%), Gaps = 40/894 (4%) Strand=Plus/Minus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | ||||||||||||||| || | || ||||| ||||||||||| || | || Sbjct 21840935 TTCTGTATGTTCCCAATCCAATACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCG 21840876 Query 229810 ACTTTCTGGACCACTGAGGAAGT---TC-CTCTGAACGCAGACGTCGTCGACTGGCGTGA 229865 | ||||||||| | || ||||| || |||| || || || ||||||| || Sbjct 21840875 TCCTTCTGGACCGCCGAAGAAGTCGATCTCTCTCAAGACAATCG----CGACTGG---GA 21840823 Query 229866 GAAACTCAAT----GACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAG 229921 ||||||| | ||||||||||||| |||||||||||| |||| | || || || | Sbjct 21840822 -AAACTCACTATCCAACGACGAACGTCACTTCATCAAACACGTCCTCGCCTTCTTTGCCG 21840764 Query 229922 GCTCCGATGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTT 229980 || || || || || |||| ||||| |||| || | ||| || || | | Sbjct 21840763 CATCAGACGGAATCGTTCTGGAGAATCTCTCGACCCGATTCA-TGTCCGATGTTCAGATC 21840705 Query 229981 CCAGAGGCACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAA 230040 |||| || || || || | | ||||| | ||| ||| |||||||| Sbjct 21840704 TCAGAAGCTCGTGCCTTCTACGGATTCCAAATCGCGATCGAGAATATTCATTCTGAGATG 21840645 Query 230041 TATGCTCTGCTTATCGACGCGCTTATTTC--CGACGAGCAAGAACGGAACGAGCTTTTTG 230098 ||| ||| ||| |||| | |||| || ||| | |||| | | | || ||| Sbjct 21840644 TATAGTCTCCTTCTCGA--CACTTACATCAAAGACAACAAAGAGAGAGATCATCTCTTTC 21840587 Query 230099 ATGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAG 230158 || || |||| ||| || || || || ||| | |||||| ||||||| | Sbjct 21840586 GCGCAATCGAAACCATTCCTTGTGTGACGAAAAAAGCAGAATGGGCTATGAAATGGAT-C 21840528 Query 230159 AAC--CTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCT 230216 ||| | ||| | || || ||| | |||| || | | || ||||||||||| | Sbjct 21840527 AACGGATCTCAAAGC-TTCGCTGAGAGAATCGTAGCTTTTGCTTGCGTTGAAGGTATATT 21840469 Query 230217 GTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT 230276 || || || || || || | || || ||| || ||| |||| | |||||||| || Sbjct 21840468 CTTCTCTGGTAGCTTTTGTTCGATATTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACT 21840409 Query 230277 CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCT 230336 | | |||||||| || || | ||||| ||||| || | ||| || | | Sbjct 21840408 CACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCACTGTGATTTC-GCTTGTT 21840350 Query 230337 T-ATGTATTCAAAGCTCC--AGAAC-AAGCTACCATTCGAGACG-GTCAAACAAATCATT 230391 | || ||| | || | ||||| ||||| || ||| | ||| || || Sbjct 21840349 TGATCTAT---AGTCTTCTTAGAACTAAGCT-TGATGAAGAACGTTTGAAATCGATAGTT 21840294 Query 230392 ACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-AT 230450 || || ||||| | || | ||||| |||| || || |||| ||| ||||| | Sbjct 21840293 TGTGATGCGGTTGAGATTGAGAGAGAGTTTGTTTGCGATGCGCTTCCTTGT-GCCTTGGT 21840235 Query 230451 TGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGT 230510 ||| ||||| ||| | ||| | |||||||| || || || || || | | || Sbjct 21840234 TGGTATGAATCGTGAGTTGATGAGTCAGTACATTGAGTTTGTTGCTGATAGGTTATTGAC 21840175 Query 230511 TGCACTTGGTTACGAGAAAGTGTACAACTCTAAG-AACCCCTTTGCATTTATGGAGCTCA 230569 ||| ||||| | | || ||||| | | || || || |||| | ||||| | | Sbjct 21840174 TGCGCTTGGGTGTGGTAAGGTGTA-TGGTGTGAGTAATCCTTTTGATTGGATGGAATTGA 21840116 Query 230570 TTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 ||||||||||||| || || ||||| || || ||| | || |||| ||||||| Sbjct 21840115 TTTCGCTTCAAGGTAAAACTAACTTTTTTGAGAAGAGAGTTGGTGAGTATCAGA 21840062 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 12647162 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 12647103 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 12647102 CCCCACGGTGGGC 12647090 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 8486453 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8486512 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8486513 CCCACGGTGGGC 8486524 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 7141185 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7141244 Query 165770 CCCACG 165775 |||||| Sbjct 7141245 CCCACG 7141250 >seq5 Length=21221946 Score = 100 bits (110), Expect = 6e-16 Identities = 282/427 (66%), Gaps = 6/427 (1%) Strand=Plus/Minus Query 230200 TGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAA 230259 |||||||||||||| | || ||||| || || || | ||||| ||||| ||| | Sbjct 3397181 TGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTTTGTTCAATCTTCTGGCTAAAGAAACGA 3397122 Query 230260 GGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCAT 230319 || | |||||||| || | || ||||| || ||| || ||||| || || || Sbjct 3397121 GGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCACGTGACGAAGGACTACAC 3397062 Query 230320 CAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGA-CG-G 230377 | |||| ||| | || || ||| | | ||||| | | ||| || | Sbjct 3397061 TGCGATTTCGCTTGCCTTCTCTACACACTTCTCAAAACGAAGCTT--AGTGAAGAACGCG 3397004 Query 230378 TCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTC 230437 | || |||| | || || || |||| ||| | ||||| | || ||||| ||| Sbjct 3397003 TGAAGTCAATCGTCTGCGACGCGGTCGAAATCGAGAGAGAGTTTGTGTGCGACGCGCTTC 3396944 Query 230438 CATGTCGCCTTA-TTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCC 230496 | || ||| || |||| |||||| ||| | ||| | ||||| || || || || || Sbjct 3396943 CGTG-CGCGTTGGTTGGGATGAACCGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCG 3396885 Query 230497 GACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCA 230556 || | |||| | ||| ||||| |||| ||| |||||| || || || |||| Sbjct 3396884 GATAGGCTTTTGGGTGCGCTTGGGTACGGGAAGGTGTACGGTGTTACAAATCCGTTTGAT 3396825 Query 230557 TTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGAC 230616 | ||||| || || ||||||||||| || || || || || || || ||||| |||| Sbjct 3396824 TGGATGGAACTTATCTCGCTTCAAGGAAAAACTAATTTTTTTGAGAAACGTGTTGGTGAT 3396765 Query 230617 TATCAGA 230623 ||||||| Sbjct 3396764 TATCAGA 3396758 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | ||||||||| || || || | || ||||| |||||||| || || | ||| Sbjct 3397824 TTCTGTATGTTCCCAATTCACTACCCACAGATCTGGGAAATGTACAAAAAAGCCGAAGCA 3397765 Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAG-ACGTCGTCGACTGGCGTGAGAA 229868 | ||||||||| |||| ||||| ||| | | ||| || | ||||||| | || Sbjct 3397764 TCCTTCTGGACCGCTGAAGAAGTAGATCT-ATCACAGGACAACCGCGACTGGGAAAACAA 3397706 Query 229869 ACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGA 229928 ||||| |||| |||||||| ||||||||||| |||| | ||| ||||| | || || Sbjct 3397705 TCTCAACGACGGTGAACGTCACTTCATCAAACATGTCCTCGCTTTCTTCGCCGCATCTGA 3397646 Query 229929 TGGTATTGTGATGGAAAATCT 229949 || || || | || ||||| Sbjct 3397645 CGGAATCGTATTAGAGAATCT 3397625 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 17806991 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17806932 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17806931 CCCACGGTGGGC 17806920 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 20049313 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 20049254 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 20049253 CCCACGGTGGGC 20049242 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 61373 AAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGA 61432 |||||||||||||| ||| | ||| ||| | || || ||||||||||||||||| ||||| Sbjct 15547695 AAGAGATTGGGGATTTGCAGGAGACTATGTGGAAGCAATGTGGTTGATGTTGCAGCAAGA 15547636 Query 61433 TACTCCAGATGACTACGTTATTGCGAC 61459 | |||||||| |||||| |||| || Sbjct 15547635 GAAGCCAGATGATTACGTTGTTGCAAC 15547609 >seq3 Length=24464547 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6996387 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6996446 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6996447 CCCACGGTGGGC 6996458 >seq1 Length=33132539 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 156596 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 156655 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 156656 CCCACGGTGGGC 156667 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 742844 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 742903 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 742904 CCCACGGTGGGC 742915 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6787687 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6787628 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6787627 CCCACGGTGGGC 6787616 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 8636941 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8637000 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8637001 CCCACGGTGGGC 8637012 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 24375882 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 24375941 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 24375942 CCCACGGTGGGC 24375953 >seq4 Length=23328337 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 22105310 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 22105369 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22105370 CCCACGGTGGGC 22105381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057814566854480