Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq7 127 2e-24
>seq7
Length=24649197
Score = 127 bits (140), Expect = 2e-24
Identities = 565/879 (64%), Gaps = 32/879 (4%)
Strand=Plus/Plus
Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735
|| || || | ||| | || || |||||||||||||| || | || || || |||
Sbjct 21840064 TGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAATTCC 21840123
Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795
|| |||||||||||||| | | | | | ||| |||| || | | | |||
Sbjct 21840124 ATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAATAAC 21840183
Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855
||||| || ||||| || || || || | ||| || || | ||||| || | | | |
Sbjct 21840184 CTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCA-AGGC 21840242
Query 16856 ACC-GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACT 16914
|| ||||| || || | ||| | ||| || ||||||| || | || |||
Sbjct 21840243 ACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATC----ACAA-ACT 21840297
Query 16915 AGCAACT-----CGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCG 16969
| | | | ||||| || | || | ||||| | || | |||| ||| |||
Sbjct 21840298 ATCGATTTCAAACGTTCTTCATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACAAGCG 21840357
Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029
||||| || || | || |||||||| || | ||||||||| ||||| | || |||
Sbjct 21840358 AAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGC 21840417
Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089
|| ||||||||||| ||||| ||||||| || ||||| |||||||||||
Sbjct 21840418 ATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCT 21840477
Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTA-CGTCGCGTCTTTGTTACGAATCCA 17148
|| ||| | ||||| || | | || || ||| | | | | | | ||| |||||
Sbjct 21840478 TCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAG-ATCCGTT---GATCCA 21840533
Query 17149 TTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA---- 17204
|||| |||| || ||||||| | | | ||| || ||||| || || ||
Sbjct 21840534 TTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAG 21840593
Query 17205 ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTT 17264
|| || ||||| || ||| ||| | || || || |||| || || || ||||| |
Sbjct 21840594 ATGATCTCTCTCTT---TGT-TGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCT 21840649
Query 17265 CGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTT 17324
| || || || ||||| || || || || |||||||| ||| || ||||| | || |
Sbjct 21840650 CAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCT 21840709
Query 17325 GAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383
|||| || || | |||||| || ||||| || ||||| ||||| |||||
Sbjct 21840710 GAACATCGGACAT-GAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCA 21840768
Query 17384 AAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTA-AGAACG---CGCCA 17439
|| || || | | || || ||||| | ||||| || || | || | |||
Sbjct 21840769 AAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGT-CGTTGGATAGTGAGTTTTCCCA 21840827
Query 17440 GTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTT 17499
||| |||| || | ||| |||||||||| |||||| || || | || ||
Sbjct 21840828 GTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTT 21840887
Query 17500 TTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538
|| ||||| | ||| || | |||||| || |||||
Sbjct 21840888 CTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAA 21840926
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517541097353280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |