Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq7 127 2e-24 >seq7 Length=24649197 Score = 127 bits (140), Expect = 2e-24 Identities = 565/879 (64%), Gaps = 32/879 (4%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || || || | ||| | || || |||||||||||||| || | || || || ||| Sbjct 21840064 TGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAATTCC 21840123 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 || |||||||||||||| | | | | | ||| |||| || | | | ||| Sbjct 21840124 ATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAATAAC 21840183 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 ||||| || ||||| || || || || | ||| || || | ||||| || | | | | Sbjct 21840184 CTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCA-AGGC 21840242 Query 16856 ACC-GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACT 16914 || ||||| || || | ||| | ||| || ||||||| || | || ||| Sbjct 21840243 ACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATC----ACAA-ACT 21840297 Query 16915 AGCAACT-----CGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCG 16969 | | | | ||||| || | || | ||||| | || | |||| ||| ||| Sbjct 21840298 ATCGATTTCAAACGTTCTTCATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACAAGCG 21840357 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 ||||| || || | || |||||||| || | ||||||||| ||||| | || ||| Sbjct 21840358 AAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGC 21840417 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 || ||||||||||| ||||| ||||||| || ||||| ||||||||||| Sbjct 21840418 ATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCT 21840477 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTA-CGTCGCGTCTTTGTTACGAATCCA 17148 || ||| | ||||| || | | || || ||| | | | | | | ||| ||||| Sbjct 21840478 TCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAG-ATCCGTT---GATCCA 21840533 Query 17149 TTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA---- 17204 |||| |||| || ||||||| | | | ||| || ||||| || || || Sbjct 21840534 TTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAG 21840593 Query 17205 ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTT 17264 || || ||||| || ||| ||| | || || || |||| || || || ||||| | Sbjct 21840594 ATGATCTCTCTCTT---TGT-TGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCT 21840649 Query 17265 CGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTT 17324 | || || || ||||| || || || || |||||||| ||| || ||||| | || | Sbjct 21840650 CAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCT 21840709 Query 17325 GAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383 |||| || || | |||||| || ||||| || ||||| ||||| ||||| Sbjct 21840710 GAACATCGGACAT-GAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCA 21840768 Query 17384 AAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTA-AGAACG---CGCCA 17439 || || || | | || || ||||| | ||||| || || | || | ||| Sbjct 21840769 AAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGT-CGTTGGATAGTGAGTTTTCCCA 21840827 Query 17440 GTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTT 17499 ||| |||| || | ||| |||||||||| |||||| || || | || || Sbjct 21840828 GTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTT 21840887 Query 17500 TTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || ||||| | ||| || | |||||| || ||||| Sbjct 21840888 CTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAA 21840926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517541097353280