Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq7 129 6e-25 seq5 105 7e-18 >seq7 Length=24649197 Score = 129 bits (142), Expect = 6e-25 Identities = 479/742 (65%), Gaps = 19/742 (3%) Strand=Plus/Plus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 || || |||| ||| | || || || ||||||||||| || | | || || |||| Sbjct 21840064 TGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAATTCC 21840123 Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAAT 16033 || ||||||| |||||| | | | | | |||| |||| || | || | ||| Sbjct 21840124 ATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAATAAC 21840183 Query 16034 CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAGTCG 16092 ||||| || ||||| || || || |||| ||| || || | ||| || || | ||| | Sbjct 21840184 CTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAAGGCA 21840243 Query 16093 TACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATC 16152 | ||||| || | | ||| | | || ||| ||||||| || || |||| Sbjct 21840244 CAA-GGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAAC--TATC 21840300 Query 16153 GGTGGCT--CGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAG 16210 | | | ||| |||| | || | || | || | || | ||| ||||| Sbjct 21840301 GATTTCAAACGTTCTTCATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACAAGCGAAA 21840360 Query 16211 TCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATT 16270 || || || || ||||||||||| || | |||||| || || || | || |||||| Sbjct 21840361 TCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATT 21840420 Query 16271 TTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCA 16330 ||||||||||| ||||||||||||| | ||| || || ||||||||||| ||| Sbjct 21840421 AAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCA 21840480 Query 16331 ACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTC 16390 || | |||||||| | | || || ||| | | | | || ||||||||| Sbjct 21840481 ACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGTT---GATCCATTTC 21840537 Query 16391 TGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA----A 16446 ||||||| ||||||| | | |||| || ||||| || || ||| | | Sbjct 21840538 ATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAGATGA 21840597 Query 16447 TTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGA 16506 | ||||| ||| || || | || || || || | || | ||| ||||| || || Sbjct 21840598 TCTCTCTCTTTGTTG----TCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 21840653 Query 16507 GTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTAC 16566 || || ||||| || || || || ||||| |||||| ||||| || | || || || Sbjct 21840654 ATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGAAC 21840713 Query 16567 TTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAA 16625 || || | ||||| || || ||||| ||||| ||||| ||| ||||| | Sbjct 21840714 ATCGGACAT-GAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAAAGA 21840772 Query 16626 ACGCCAATATGTGCTTAATGAA 16647 | || | | ||| || ||||| Sbjct 21840773 AGGCGAGGACGTGTTTGATGAA 21840794 >seq5 Length=21221946 Score = 105 bits (116), Expect = 7e-18 Identities = 284/428 (66%), Gaps = 16/428 (4%) Strand=Plus/Plus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 || ||||||| ||| ||||| || || || ||||||||||| | | || ||| |||| Sbjct 3396760 TGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAGTTCC 3396819 Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAAT 16033 || ||||||| ||||| ||| | | | ||| |||||| || || | | || Sbjct 3396820 ATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTACCCAAG---CGCACCCAAA 3396876 Query 16034 ---CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAG 16089 ||||| || ||||| || ||||| |||| ||| || || | || || || | || Sbjct 3396877 AGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAAC 3396936 Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149 || || ||||| || | | ||| | | || || | ||||| || | ||| Sbjct 3396937 GCGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGACGAT 3396995 Query 16150 ATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAG----GTGTTTAAACATTAGACACG 16205 | | ||| |||| | | | |||| | |||| || | | || || | Sbjct 3396996 TGACTTCACGCGTTCTTCA--CTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCAAG 3397051 Query 16206 CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTG 16265 |||| ||||| |||||||||||||| | ||| | |||||||||||| |||| || | Sbjct 3397052 CGAAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCAG 3397111 Query 16266 GCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATAC 16325 |||| |||||||||||||| |||||| || | | ||| || || ||||| |||| Sbjct 3397112 GCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATAC 3397171 Query 16326 CCTCAACA 16333 | |||||| Sbjct 3397172 CTTCAACA 3397179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511409950694720