Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq7 129 6e-25
seq5 105 7e-18
>seq7
Length=24649197
Score = 129 bits (142), Expect = 6e-25
Identities = 479/742 (65%), Gaps = 19/742 (3%)
Strand=Plus/Plus
Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973
|| || |||| ||| | || || || ||||||||||| || | | || || ||||
Sbjct 21840064 TGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAATTCC 21840123
Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAAT 16033
|| ||||||| |||||| | | | | | |||| |||| || | || | |||
Sbjct 21840124 ATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAATAAC 21840183
Query 16034 CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAGTCG 16092
||||| || ||||| || || || |||| ||| || || | ||| || || | ||| |
Sbjct 21840184 CTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAAGGCA 21840243
Query 16093 TACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATC 16152
| ||||| || | | ||| | | || ||| ||||||| || || ||||
Sbjct 21840244 CAA-GGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAAC--TATC 21840300
Query 16153 GGTGGCT--CGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAG 16210
| | | ||| |||| | || | || | || | || | ||| |||||
Sbjct 21840301 GATTTCAAACGTTCTTCATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACAAGCGAAA 21840360
Query 16211 TCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATT 16270
|| || || || ||||||||||| || | |||||| || || || | || ||||||
Sbjct 21840361 TCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATT 21840420
Query 16271 TTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCA 16330
||||||||||| ||||||||||||| | ||| || || ||||||||||| |||
Sbjct 21840421 AAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCA 21840480
Query 16331 ACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTC 16390
|| | |||||||| | | || || ||| | | | | || |||||||||
Sbjct 21840481 ACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGTT---GATCCATTTC 21840537
Query 16391 TGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA----A 16446
||||||| ||||||| | | |||| || ||||| || || ||| | |
Sbjct 21840538 ATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAGATGA 21840597
Query 16447 TTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGA 16506
| ||||| ||| || || | || || || || | || | ||| ||||| || ||
Sbjct 21840598 TCTCTCTCTTTGTTG----TCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 21840653
Query 16507 GTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTAC 16566
|| || ||||| || || || || ||||| |||||| ||||| || | || || ||
Sbjct 21840654 ATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGAAC 21840713
Query 16567 TTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAA 16625
|| || | ||||| || || ||||| ||||| ||||| ||| ||||| |
Sbjct 21840714 ATCGGACAT-GAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAAAGA 21840772
Query 16626 ACGCCAATATGTGCTTAATGAA 16647
| || | | ||| || |||||
Sbjct 21840773 AGGCGAGGACGTGTTTGATGAA 21840794
>seq5
Length=21221946
Score = 105 bits (116), Expect = 7e-18
Identities = 284/428 (66%), Gaps = 16/428 (4%)
Strand=Plus/Plus
Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973
|| ||||||| ||| ||||| || || || ||||||||||| | | || ||| ||||
Sbjct 3396760 TGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAGTTCC 3396819
Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAAT 16033
|| ||||||| ||||| ||| | | | ||| |||||| || || | | ||
Sbjct 3396820 ATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTACCCAAG---CGCACCCAAA 3396876
Query 16034 ---CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAG 16089
||||| || ||||| || ||||| |||| ||| || || | || || || | ||
Sbjct 3396877 AGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAAC 3396936
Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149
|| || ||||| || | | ||| | | || || | ||||| || | |||
Sbjct 3396937 GCGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGACGAT 3396995
Query 16150 ATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAG----GTGTTTAAACATTAGACACG 16205
| | ||| |||| | | | |||| | |||| || | | || || |
Sbjct 3396996 TGACTTCACGCGTTCTTCA--CTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCAAG 3397051
Query 16206 CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTG 16265
|||| ||||| |||||||||||||| | ||| | |||||||||||| |||| || |
Sbjct 3397052 CGAAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCAG 3397111
Query 16266 GCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATAC 16325
|||| |||||||||||||| |||||| || | | ||| || || ||||| ||||
Sbjct 3397112 GCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATAC 3397171
Query 16326 CCTCAACA 16333
| ||||||
Sbjct 3397172 CTTCAACA 3397179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511409950694720
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