Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq7 203 4e-47
seq5 122 1e-22
>seq7
Length=24649197
Score = 203 bits (224), Expect = 4e-47
Identities = 431/631 (68%), Gaps = 23/631 (4%)
Strand=Plus/Plus
Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188
|||||||| |||||||| ||||| ||||| |||||||| ||| |||||||| || ||
Sbjct 21840346 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAAT 21840405
Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 24247
|||||||| ||||||| || || || || | ||| ||||| || |||| | | |||||
Sbjct 21840406 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGA 21840464
Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC 24307
||||| || ||||| || ||||| || | | ||| || | | || ||
Sbjct 21840465 GAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAG 21840520
Query 24308 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363
|| || ||||| || |||||| || || || || | |||||||| || || || |
Sbjct 21840521 ATCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGA 21840580
Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423
| || |||||||| | | | || || | ||||| | || || || | | ||||
Sbjct 21840581 TTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGAC 21840640
Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483
||||||| || |||||||| || || || || ||||| ||||||||||| | ||| |
Sbjct 21840641 TATACATCTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTT 21840700
Query 24484 CGGTAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542
| | ||||| || || ||| ||||| | | ||| || || ||||||||
Sbjct 21840701 CTGAGATCTGAACATC-GGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCT 21840759
Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGG--TGTTAG 24598
|| ||||| || || | || ||||| || || | |||||| ||| || ||
Sbjct 21840760 GATGCGGCAAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAG 21840819
Query 24599 TTTATTCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 24655
||| | ||| || |||| |||| ||| | ||| |||||||| | ||||| || ||
Sbjct 21840820 TTT-TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGA 21840875
Query 24656 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715
|| || || || || ||||| | |||||| | | ||||| ||||| || ||| ||
Sbjct 21840876 CGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAA 21840935
Query 24716 TCTATTTGGATTTTTTGCAAGGATTGGTTCC 24746
|| || ||| || || ||||||||||||
Sbjct 21840936 TCGATCTGGTGTTGGTGTTAGGATTGGTTCC 21840966
>seq5
Length=21221946
Score = 122 bits (134), Expect = 1e-22
Identities = 274/406 (67%), Gaps = 7/406 (2%)
Strand=Plus/Plus
Query 24324 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 24383
||||| | || ||||| || ||||| || || || || ||| |||||||| | |
Sbjct 3397430 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 3397489
Query 24384 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 24443
| || || ||||||| | ||| ||||| | | ||||||||||| ||||| || ||
Sbjct 3397490 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATA 3397549
Query 24444 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATA 24503
|||||||| || || || || ||||||||| | ||||| | | || || || |
Sbjct 3397550 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 3397608
Query 24504 CA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 24562
|| ||||| || | ||| || || ||||||||| || || || || || |
Sbjct 3397609 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGAAGAAAGCGAG 3397668
Query 24563 TACATGTTTTATAAA---ATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGATAT 24618
|||||||| || || | || |||| | | | | |||| | ||| || | | |
Sbjct 3397669 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCCAGTCGCGGTTGT 3397727
Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678
| | |||| ||| |||||||| | ||||| || ||||| || || ||||| ||||| |
Sbjct 3397728 CCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTTTTGTACATTT 3397787
Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 24724
|||||| | | || |||||||| || ||| ||||| | |||
Sbjct 3397788 CCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 3397833
Score = 104 bits (114), Expect = 3e-17
Identities = 285/429 (66%), Gaps = 12/429 (3%)
Strand=Plus/Plus
Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902
||| || || ||||| |||||||| || |||||||||||||| |||| | || |||
Sbjct 3396756 TTTCTGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAG 3396815
Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGA--TTCTTTTAAATCCCAATT-CAGA 23959
|||||| |||| | ||||| |||||| || | ||| || ||||| ||
Sbjct 3396816 TTCCATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTA---CCCAAGCGCACC 3396872
Query 23960 AATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTAT 24019
| | ||||| || |||||||| ||||| |||||| |||| ||||| || |
Sbjct 3396873 CAAAAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAAC 3396932
Query 24020 -AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 24078
|| || ||||| || | | ||| ||| || || ||||||||| |
Sbjct 3396933 CAACGCGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGA 3396991
Query 24079 TAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACA 24136
|| || | || ||||||||| | | | | | || ||| || | | | ||
Sbjct 3396992 CGATTGACTTCACGCGTTCTTCACTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCA 3397049
Query 24137 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 24196
||||||||||||||||| || ||||| | || |||||||||||||| || |||||
Sbjct 3397050 AGCGAAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCC 3397109
Query 24197 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 24256
||||| || || || || || ||||| || || || ||| ||| || ||||| ||
Sbjct 3397110 AGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGAT 3397169
Query 24257 TCCTTCTAC 24265
||||| ||
Sbjct 3397170 ACCTTCAAC 3397178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593716434622080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |