Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq7 203 4e-47 seq5 122 1e-22 >seq7 Length=24649197 Score = 203 bits (224), Expect = 4e-47 Identities = 431/631 (68%), Gaps = 23/631 (4%) Strand=Plus/Plus Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 |||||||| |||||||| ||||| ||||| |||||||| ||| |||||||| || || Sbjct 21840346 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAAT 21840405 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 24247 |||||||| ||||||| || || || || | ||| ||||| || |||| | | ||||| Sbjct 21840406 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGA 21840464 Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC 24307 ||||| || ||||| || ||||| || | | ||| || | | || || Sbjct 21840465 GAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAG 21840520 Query 24308 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 || || ||||| || |||||| || || || || | |||||||| || || || | Sbjct 21840521 ATCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGA 21840580 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 | || |||||||| | | | || || | ||||| | || || || | | |||| Sbjct 21840581 TTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGAC 21840640 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 ||||||| || |||||||| || || || || ||||| ||||||||||| | ||| | Sbjct 21840641 TATACATCTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTT 21840700 Query 24484 CGGTAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 | | ||||| || || ||| ||||| | | ||| || || |||||||| Sbjct 21840701 CTGAGATCTGAACATC-GGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCT 21840759 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGG--TGTTAG 24598 || ||||| || || | || ||||| || || | |||||| ||| || || Sbjct 21840760 GATGCGGCAAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAG 21840819 Query 24599 TTTATTCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 24655 ||| | ||| || |||| |||| ||| | ||| |||||||| | ||||| || || Sbjct 21840820 TTT-TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGA 21840875 Query 24656 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || || || || || ||||| | |||||| | | ||||| ||||| || ||| || Sbjct 21840876 CGCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAA 21840935 Query 24716 TCTATTTGGATTTTTTGCAAGGATTGGTTCC 24746 || || ||| || || |||||||||||| Sbjct 21840936 TCGATCTGGTGTTGGTGTTAGGATTGGTTCC 21840966 >seq5 Length=21221946 Score = 122 bits (134), Expect = 1e-22 Identities = 274/406 (67%), Gaps = 7/406 (2%) Strand=Plus/Plus Query 24324 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 24383 ||||| | || ||||| || ||||| || || || || ||| |||||||| | | Sbjct 3397430 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 3397489 Query 24384 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 24443 | || || ||||||| | ||| ||||| | | ||||||||||| ||||| || || Sbjct 3397490 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATA 3397549 Query 24444 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATA 24503 |||||||| || || || || ||||||||| | ||||| | | || || || | Sbjct 3397550 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 3397608 Query 24504 CA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 24562 || ||||| || | ||| || || ||||||||| || || || || || | Sbjct 3397609 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGAAGAAAGCGAG 3397668 Query 24563 TACATGTTTTATAAA---ATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGATAT 24618 |||||||| || || | || |||| | | | | |||| | ||| || | | | Sbjct 3397669 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCCAGTCGCGGTTGT 3397727 Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 | | |||| ||| |||||||| | ||||| || ||||| || || ||||| ||||| | Sbjct 3397728 CCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTTTTGTACATTT 3397787 Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 24724 |||||| | | || |||||||| || ||| ||||| | ||| Sbjct 3397788 CCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 3397833 Score = 104 bits (114), Expect = 3e-17 Identities = 285/429 (66%), Gaps = 12/429 (3%) Strand=Plus/Plus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 ||| || || ||||| |||||||| || |||||||||||||| |||| | || ||| Sbjct 3396756 TTTCTGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAG 3396815 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGA--TTCTTTTAAATCCCAATT-CAGA 23959 |||||| |||| | ||||| |||||| || | ||| || ||||| || Sbjct 3396816 TTCCATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTA---CCCAAGCGCACC 3396872 Query 23960 AATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTAT 24019 | | ||||| || |||||||| ||||| |||||| |||| ||||| || | Sbjct 3396873 CAAAAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAAC 3396932 Query 24020 -AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 24078 || || ||||| || | | ||| ||| || || ||||||||| | Sbjct 3396933 CAACGCGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGA 3396991 Query 24079 TAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACA 24136 || || | || ||||||||| | | | | | || ||| || | | | || Sbjct 3396992 CGATTGACTTCACGCGTTCTTCACTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCA 3397049 Query 24137 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 24196 ||||||||||||||||| || ||||| | || |||||||||||||| || ||||| Sbjct 3397050 AGCGAAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCC 3397109 Query 24197 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 24256 ||||| || || || || || ||||| || || || ||| ||| || ||||| || Sbjct 3397110 AGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGAT 3397169 Query 24257 TCCTTCTAC 24265 ||||| || Sbjct 3397170 ACCTTCAAC 3397178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593716434622080