Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq6 107 2e-18
seq7 86.0 5e-12
seq2 86.0 5e-12
>seq6
Length=25113588
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| || | |||||| | || ||||| |||||||| ||| || | |
Sbjct 10621862 ATGCAAATTTTTGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 10621921
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | || ||||| ||| ||| || || ||||| | || |||| ||
Sbjct 10621922 GACACCATTGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCTCTAGACCAG 10621981
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|||||| | ||||| || || ||||| || |||||| | ||| |||||||||||||
Sbjct 10621982 CAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACTTTGGCCGATTACAAC 10622041
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|| ||||| ||||| ||||| ||| |||| | || ||| |||| ||
Sbjct 10622042 ATCCAGAAAGAATCAACTCTCCACTTGGTTCTTCGTTTAAGAGGTGG 10622088
Score = 102 bits (112), Expect = 7e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| ||||| ||| | || || || || ||| | |||||||| || |||||||| |||
Sbjct 22758702 GACAAAGAGGGTATCCCTCCGGACCAGCAGAGATTGATCTTTGCCGGGAAACAACTTGAA 22758643
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
||| || |||| |||| || ||||| ||||||||||| ||||| |||||| |||||||
Sbjct 22758642 GATGGCAGAACTTTGGCTGACTACAACATTCAGAAGGAGTCTACCCTTCACTTGGTGTTG 22758583
Query 29175 CGATTACGAGGAGG 29188
|| | || |||||
Sbjct 22758582 CGTCTCCGTGGAGG 22758569
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| ||||| ||| | || || || || || | ||||| || || || ||||| |||
Sbjct 23404056 GACAAAGAGGGTATCCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAA 23404115
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
||| || |||| |||| |||||||| ||||||||||| ||||| |||||| |||| ||
Sbjct 23404116 GATGGCAGAACTTTGGCTGATTACAACATTCAGAAGGAGTCTACACTTCACTTGGTCTTG 23404175
Query 29175 CGATTACGAGGAGG 29188
|| | || |||||
Sbjct 23404176 CGTCTGCGTGGAGG 23404189
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105
|||||| || |||||||| | || |||||| || ||||| ||||| || || |||
Sbjct 10622630 AAAATTCAGGACAAAGAAGGGATCCCACCAGATCAGCAGAGACTCATCTTCGCTGGTAAA 10622689
Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165
|| || || ||| ||| | || ||||||||||||||||||||||| || ||||||
Sbjct 10622690 CAGCTTGAGGATGGTCGGACTCTTGCGGATTACAATATTCAGAAGGAATCAACCCTTCAC 10622749
Query 29166 ATGGTGTTACG 29176
| ||||| ||
Sbjct 10622750 CTTGTGTTGCG 10622760
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| ||||| ||| | || || || || || | ||||| || || || ||||| |||
Sbjct 22900758 GACAAAGAGGGTATTCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAA 22900817
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
|| || |||| |||| || ||||| ||||||||||| ||||| ||||| ||||||||
Sbjct 22900818 GACGGCAGAACTTTGGCTGACTACAACATTCAGAAGGAGTCTACCCTTCATTTGGTGTTA 22900877
Query 29175 CGATTACGAGGAGG 29188
|| | || |||||
Sbjct 22900878 CGTCTGCGTGGAGG 22900891
>seq7
Length=24649197
Score = 86.0 bits (94), Expect = 5e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| |||||||| | || |||| || ||| | ||||||||||| || |||||||| ||
Sbjct 18994945 GACAAAGAAGGGATTCCTCTAGACCAGCAACGGCTTATCTTTGCCGGTAAACAACTCGAG 18994886
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGG 29169
||| | ||| |||| |||||||||||||| ||||| || | ||| ||| |||
Sbjct 18994885 GATGGCCGTACTTTGGCTGATTACAATATTCAAAAGGAGTCAATTCTCCACTTGG 18994831
Score = 82.4 bits (90), Expect = 7e-11
Identities = 146/211 (69%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||||||||| | ||||| | || |||| |||||||||| ||| || | ||
Sbjct 18994126 ATGCAAATATTTGTGAAAACCCTTACTGGCAGAACCATTACCCTAGAAGTTGAGAGCTCA 18994067
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | || | || || ||| ||||| |||| | || | || ||
Sbjct 18994066 GACACCATTGACAATGTGAAAGCTAAGATTCAAGATAAGGAAGAAATCCCTGCGGACCAG 18994007
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139
|| ||||||||||| || ||||| ||||| || ||| || || ||| || |||||||
Sbjct 18994006 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCCTA--GCAGATTACA 18993949
Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGT 29170
| || ||||| ||||| ||||| || ||||
Sbjct 18993948 ACATCCAGAAAGAATCAACTCTCCATTTGGT 18993918
>seq2
Length=19320864
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| ||| | |||||| | || ||||| |||||||| ||| || | |
Sbjct 9127156 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 9127097
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | || ||||| ||| ||| ||||| |||||| | || || ||
Sbjct 9127096 GACACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCTGACCAG 9127037
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| ||| | ||||| || || ||||| | |||||| || |||| |||||||||
Sbjct 9127036 CAGAGATTGATCTTCGCTGGTAAACAGTTAGAAGATGGTCGTACCTTGGCAGATTACAAT 9126977
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|| ||||||||||| || || || |||| | | ||| |||| ||
Sbjct 9126976 ATCCAGAAGGAATCAACACTCCATTTGGTTCTCAGGTTAAGAGGTGG 9126930
Score = 86.0 bits (94), Expect = 5e-12
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134
||| ||||| ||||| |||||||| || ||||| || || ||| ||| |||| ||
Sbjct 9214912 AGACCAACAGAGACTCATCTTTGCTGGGAAACAGCTCGAGGATGGACGGACTTTGGCTGA 9214853
Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176
|||||| || |||||||||||||| |||||| | ||||| ||
Sbjct 9214852 TTACAACATCCAGAAGGAATCTACCCTTCACCTTGTGTTGCG 9214811
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| ||| | |||||| | || ||||| |||||||| ||| || | |
Sbjct 9215937 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 9215878
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | || ||||| ||| ||| ||||| |||||| | || || ||
Sbjct 9215877 GACACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCTGACCAG 9215818
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| ||| | ||||| || || ||||| | |||||| || |||| |||||||||
Sbjct 9215817 CAGAGATTGATCTTCGCTGGTAAACAGTTAGAAGATGGTCGTACCTTGGCAGATTACAAT 9215758
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|| ||||||||||| || || || |||| | | ||| |||| ||
Sbjct 9215757 ATCCAGAAGGAATCAACACTCCATTTGGTTCTCAGGTTAAGAGGTGG 9215711
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428332366639880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |