Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq7 86.0 5e-12 seq2 86.0 5e-12 >seq6 Length=25113588 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||| | || ||||| |||||||| ||| || | | Sbjct 10621862 ATGCAAATTTTTGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 10621921 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||| ||| || || ||||| | || |||| || Sbjct 10621922 GACACCATTGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCTCTAGACCAG 10621981 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| || || ||||| || |||||| | ||| ||||||||||||| Sbjct 10621982 CAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACTTTGGCCGATTACAAC 10622041 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||| ||||| ||| |||| | || ||| |||| || Sbjct 10622042 ATCCAGAAAGAATCAACTCTCCACTTGGTTCTTCGTTTAAGAGGTGG 10622088 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| ||| | || || || || ||| | |||||||| || |||||||| ||| Sbjct 22758702 GACAAAGAGGGTATCCCTCCGGACCAGCAGAGATTGATCTTTGCCGGGAAACAACTTGAA 22758643 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || |||| |||| || ||||| ||||||||||| ||||| |||||| ||||||| Sbjct 22758642 GATGGCAGAACTTTGGCTGACTACAACATTCAGAAGGAGTCTACCCTTCACTTGGTGTTG 22758583 Query 29175 CGATTACGAGGAGG 29188 || | || ||||| Sbjct 22758582 CGTCTCCGTGGAGG 22758569 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| ||| | || || || || || | ||||| || || || ||||| ||| Sbjct 23404056 GACAAAGAGGGTATCCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAA 23404115 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || |||| |||| |||||||| ||||||||||| ||||| |||||| |||| || Sbjct 23404116 GATGGCAGAACTTTGGCTGATTACAACATTCAGAAGGAGTCTACACTTCACTTGGTCTTG 23404175 Query 29175 CGATTACGAGGAGG 29188 || | || ||||| Sbjct 23404176 CGTCTGCGTGGAGG 23404189 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || |||||||| | || |||||| || ||||| ||||| || || ||| Sbjct 10622630 AAAATTCAGGACAAAGAAGGGATCCCACCAGATCAGCAGAGACTCATCTTCGCTGGTAAA 10622689 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 || || || ||| ||| | || ||||||||||||||||||||||| || |||||| Sbjct 10622690 CAGCTTGAGGATGGTCGGACTCTTGCGGATTACAATATTCAGAAGGAATCAACCCTTCAC 10622749 Query 29166 ATGGTGTTACG 29176 | ||||| || Sbjct 10622750 CTTGTGTTGCG 10622760 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| ||| | || || || || || | ||||| || || || ||||| ||| Sbjct 22900758 GACAAAGAGGGTATTCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAACTTGAA 22900817 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || |||| |||| || ||||| ||||||||||| ||||| ||||| |||||||| Sbjct 22900818 GACGGCAGAACTTTGGCTGACTACAACATTCAGAAGGAGTCTACCCTTCATTTGGTGTTA 22900877 Query 29175 CGATTACGAGGAGG 29188 || | || ||||| Sbjct 22900878 CGTCTGCGTGGAGG 22900891 >seq7 Length=24649197 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || |||| || ||| | ||||||||||| || |||||||| || Sbjct 18994945 GACAAAGAAGGGATTCCTCTAGACCAGCAACGGCTTATCTTTGCCGGTAAACAACTCGAG 18994886 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGG 29169 ||| | ||| |||| |||||||||||||| ||||| || | ||| ||| ||| Sbjct 18994885 GATGGCCGTACTTTGGCTGATTACAATATTCAAAAGGAGTCAATTCTCCACTTGG 18994831 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| | ||||| | || |||| |||||||||| ||| || | || Sbjct 18994126 ATGCAAATATTTGTGAAAACCCTTACTGGCAGAACCATTACCCTAGAAGTTGAGAGCTCA 18994067 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || || ||| ||||| |||| | || | || || Sbjct 18994066 GACACCATTGACAATGTGAAAGCTAAGATTCAAGATAAGGAAGAAATCCCTGCGGACCAG 18994007 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || ||||||||||| || ||||| ||||| || ||| || || ||| || ||||||| Sbjct 18994006 CAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGAACCCTA--GCAGATTACA 18993949 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGT 29170 | || ||||| ||||| ||||| || |||| Sbjct 18993948 ACATCCAGAAAGAATCAACTCTCCATTTGGT 18993918 >seq2 Length=19320864 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||| | || ||||| |||||||| ||| || | | Sbjct 9127156 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 9127097 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||| ||| ||||| |||||| | || || || Sbjct 9127096 GACACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCTGACCAG 9127037 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | ||||| || || ||||| | |||||| || |||| ||||||||| Sbjct 9127036 CAGAGATTGATCTTCGCTGGTAAACAGTTAGAAGATGGTCGTACCTTGGCAGATTACAAT 9126977 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||| || || || |||| | | ||| |||| || Sbjct 9126976 ATCCAGAAGGAATCAACACTCCATTTGGTTCTCAGGTTAAGAGGTGG 9126930 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||| ||||| ||||| |||||||| || ||||| || || ||| ||| |||| || Sbjct 9214912 AGACCAACAGAGACTCATCTTTGCTGGGAAACAGCTCGAGGATGGACGGACTTTGGCTGA 9214853 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||| || |||||||||||||| |||||| | ||||| || Sbjct 9214852 TTACAACATCCAGAAGGAATCTACCCTTCACCTTGTGTTGCG 9214811 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||| | || ||||| |||||||| ||| || | | Sbjct 9215937 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 9215878 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||| ||| ||||| |||||| | || || || Sbjct 9215877 GACACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCTGACCAG 9215818 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | ||||| || || ||||| | |||||| || |||| ||||||||| Sbjct 9215817 CAGAGATTGATCTTCGCTGGTAAACAGTTAGAAGATGGTCGTACCTTGGCAGATTACAAT 9215758 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||| || || || |||| | | ||| |||| || Sbjct 9215757 ATCCAGAAGGAATCAACACTCCATTTGGTTCTCAGGTTAAGAGGTGG 9215711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428332366639880