Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq6 95.1 1e-14
seq7 86.0 5e-12
>seq6
Length=25113588
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| || | |||||| | || ||||| |||||||| ||| || | |
Sbjct 10621862 ATGCAAATTTTTGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 10621921
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | || | ||| ||| ||| || || ||||| | || |||| ||
Sbjct 10621922 GACACCATTGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCTCTAGACCAG 10621981
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|||||| | ||||| || || ||||| | |||||| | ||| |||||||||||||
Sbjct 10621982 CAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACTTTGGCCGATTACAAC 10622041
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
|| || || ||||| ||||| ||| |||| | || ||| |||| ||
Sbjct 10622042 ATCCAGAAAGAATCAACTCTCCACTTGGTTCTTCGTTTAAGAGGTGG 10622088
>seq7
Length=24649197
Score = 86.0 bits (94), Expect = 5e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
|| |||||||| | || |||| || ||| | ||||||||||| || |||||| | ||
Sbjct 18994945 GACAAAGAAGGGATTCCTCTAGACCAGCAACGGCTTATCTTTGCCGGTAAACAACTCGAG 18994886
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGG 25242
||| | ||| |||| |||||||||||||||||||| || | ||| ||| |||
Sbjct 18994885 GATGGCCGTACTTTGGCTGATTACAATATTCAAAAGGAGTCAATTCTCCACTTGG 18994831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410793315416144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |