Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 1e-14 seq7 86.0 5e-12 >seq6 Length=25113588 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | |||||| | || ||||| |||||||| ||| || | | Sbjct 10621862 ATGCAAATTTTTGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 10621921 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||| ||| || || ||||| | || |||| || Sbjct 10621922 GACACCATTGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCTCTAGACCAG 10621981 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | ||||| || || ||||| | |||||| | ||| ||||||||||||| Sbjct 10621982 CAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACTTTGGCCGATTACAAC 10622041 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || || ||||| ||||| ||| |||| | || ||| |||| || Sbjct 10622042 ATCCAGAAAGAATCAACTCTCCACTTGGTTCTTCGTTTAAGAGGTGG 10622088 >seq7 Length=24649197 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || |||| || ||| | ||||||||||| || |||||| | || Sbjct 18994945 GACAAAGAAGGGATTCCTCTAGACCAGCAACGGCTTATCTTTGCCGGTAAACAACTCGAG 18994886 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGG 25242 ||| | ||| |||| |||||||||||||||||||| || | ||| ||| ||| Sbjct 18994885 GATGGCCGTACTTTGGCTGATTACAATATTCAAAAGGAGTCAATTCTCCACTTGG 18994831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410793315416144