Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 1e-15 seq4 95.1 2e-14 seq5 91.5 2e-13 seq6 86.0 9e-12 >seq1 Length=33132539 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | || | ||| | ||| |||||||| || || ||||||| | Sbjct 29080840 CCACCTCTCAGACGAAGCACGAGATGGAGAGTTGATTCTTTTTGGATGTTGTAATCTGCA 29080781 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| || | ||||| ||||| || || | ||| || ||||||||||| Sbjct 29080780 AGCGTTCGACCATCCTCGAGCTGTTTACCAGCGAAGATTAGTCTCTGTTGATCCGGAGGG 29080721 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| || ||||| || |||||||| || ||| Sbjct 29080720 ATTCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTGTCAATGGTGTCTGAACTCTCGACT 29080661 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || |||||||| || | || || |||||||| ||||| Sbjct 29080660 TCTAGGGTAATGGTTTTACCGGTGAGCGTCTTGATGAATATCTGCAT 29080614 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/233 (67%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || | | |||||||| | || || ||||| || || ||||| | Sbjct 10397124 CCTCCTCTCAGACGAAGCACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGCG 10397065 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || ||||||||||| || || || || | |||||||||||| || Sbjct 10397064 AGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATTAACCGTTGCTGATCCGGTGGG 10397005 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||| ||||| || ||||| ||| || Sbjct 10397004 ATTCCTTCTTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCAACC 10396945 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATT 146283 ||||| || ||||| || || |||| ||||| | ||| || |||||||| || Sbjct 10396944 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTCTT 10396892 >seq4 Length=23328337 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||||||||| || || || |||| ||| | |||||| ||||| || || ||||| Sbjct 16908335 GTTCCACCTCTGAGCCTCAAGACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCG 16908276 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | || | || ||| || ||||| || ||||||||||||| ||||| ||||| || Sbjct 16908275 GCTAAGGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGTTGATCAGGT 16908216 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| || ||||| || || Sbjct 16908215 GGAATACCCTCTTTGTCCTG 16908196 >seq5 Length=21221946 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 10409 AACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGA 10468 ||| ||| ||| ||| | |||| ||||| ||| || ||| | || || ||||| | Sbjct 12986969 AACGGATCTAAGTATCGCTGTTCCCGAAGGAACTTACGCGAGAATTGCGCCGAGATCGGG 12986910 Query 10469 TTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGG 10528 ||| ||| || | | |||||| |||| || ||||| ||||| | ||||||||||| Sbjct 12986909 TTTGGCTTGGAAACATTCGATTGATGTTGGTGCAGGAGTGATTGATGCTGATTATAGAGG 12986850 Query 10529 AAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTT 10571 | ||| || || || || |||||||||||| ||| |||||| Sbjct 12986849 ACCTGTTGGTGTGATTTTGTTTAATCATTCTGATGTTGATTTT 12986807 >seq6 Length=25113588 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | |||||||| | || |||||||| ||||| ||||| | Sbjct 8749464 CCACCTCTTAACCGGAGAACCAAATGGAGTGTTGATTCTTTCTGGATATTGTAATCAGCC 8749523 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| |||| || || ||||| || |||||||||||||| ||||||||| Sbjct 8749524 AAGGTACGGCCATCTTCTAGCTGCTTACCAGCGAAGATCAATCTTTGCTGGTCCGGAGGA 8749583 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 8749584 ATGCCTTCCTTGTCCTG 8749600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743519931320320