Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq1 98.7 1e-15
seq4 95.1 2e-14
seq5 91.5 2e-13
seq6 86.0 9e-12
>seq1
Length=33132539
Score = 98.7 bits (108), Expect = 1e-15
Identities = 153/227 (67%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| || | | || | ||| | ||| |||||||| || || ||||||| |
Sbjct 29080840 CCACCTCTCAGACGAAGCACGAGATGGAGAGTTGATTCTTTTTGGATGTTGTAATCTGCA 29080781
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| |||| | ||| || | ||||| ||||| || || | ||| || |||||||||||
Sbjct 29080780 AGCGTTCGACCATCCTCGAGCTGTTTACCAGCGAAGATTAGTCTCTGTTGATCCGGAGGG 29080721
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|||||||| || ||||| || |||||||| || |||
Sbjct 29080720 ATTCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTGTCAATGGTGTCTGAACTCTCGACT 29080661
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
||||| || || |||||||| || | || || |||||||| |||||
Sbjct 29080660 TCTAGGGTAATGGTTTTACCGGTGAGCGTCTTGATGAATATCTGCAT 29080614
Score = 91.5 bits (100), Expect = 2e-13
Identities = 155/233 (67%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| ||||| || | | |||||||| | || || ||||| || || ||||| |
Sbjct 10397124 CCTCCTCTCAGACGAAGCACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGCG 10397065
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||| | ||| || ||||||||||| || || || || | |||||||||||| ||
Sbjct 10397064 AGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATTAACCGTTGCTGATCCGGTGGG 10397005
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
||||||||||| ||||| || ||||| ||| ||
Sbjct 10397004 ATTCCTTCTTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCAACC 10396945
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATT 146283
||||| || ||||| || || |||| ||||| | ||| || |||||||| ||
Sbjct 10396944 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTCTT 10396892
>seq4
Length=23328337
Score = 95.1 bits (104), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
||||||||||| || || || |||| ||| | |||||| ||||| || || |||||
Sbjct 16908335 GTTCCACCTCTGAGCCTCAAGACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCG 16908276
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| | || | || ||| || ||||| || ||||||||||||| ||||| ||||| ||
Sbjct 16908275 GCTAAGGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGTTGATCAGGT 16908216
Query 146168 GGAATTCCTTCTTTATCTTG 146187
||||| || ||||| || ||
Sbjct 16908215 GGAATACCCTCTTTGTCCTG 16908196
>seq5
Length=21221946
Score = 91.5 bits (100), Expect = 2e-13
Identities = 118/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 10409 AACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGA 10468
||| ||| ||| ||| | |||| ||||| ||| || ||| | || || ||||| |
Sbjct 12986969 AACGGATCTAAGTATCGCTGTTCCCGAAGGAACTTACGCGAGAATTGCGCCGAGATCGGG 12986910
Query 10469 TTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGG 10528
||| ||| || | | |||||| |||| || ||||| ||||| | |||||||||||
Sbjct 12986909 TTTGGCTTGGAAACATTCGATTGATGTTGGTGCAGGAGTGATTGATGCTGATTATAGAGG 12986850
Query 10529 AAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTT 10571
| ||| || || || || |||||||||||| ||| ||||||
Sbjct 12986849 ACCTGTTGGTGTGATTTTGTTTAATCATTCTGATGTTGATTTT 12986807
>seq6
Length=25113588
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | | | |||||||| | || |||||||| ||||| ||||| |
Sbjct 8749464 CCACCTCTTAACCGGAGAACCAAATGGAGTGTTGATTCTTTCTGGATATTGTAATCAGCC 8749523
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| || | || ||| |||| || || ||||| || |||||||||||||| |||||||||
Sbjct 8749524 AAGGTACGGCCATCTTCTAGCTGCTTACCAGCGAAGATCAATCTTTGCTGGTCCGGAGGA 8749583
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| || || ||
Sbjct 8749584 ATGCCTTCCTTGTCCTG 8749600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743519931320320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |