Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq7 223 3e-53
>seq7
Length=24649197
Score = 223 bits (246), Expect = 3e-53
Identities = 577/868 (66%), Gaps = 16/868 (2%)
Strand=Plus/Plus
Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988
|||||||| || ||| ||||| |||| ||||||||| ||||| || || ||||| |||
Sbjct 21840046 GACATAACAGAAGCTTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCT 21840105
Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048
| | ||||| |||||| ||||||||||||| | || ||| ||| | ||
Sbjct 21840106 TGAAGCGAAATCAATTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACA- 21840164
Query 16049 CCCAATTCCAA-CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107
||||| || |||||| ||||| || ||||| || || ||||| |||| || ||||
Sbjct 21840165 CCCAAGCGCAGTCAATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACG 21840224
Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167
||||| || | || | ||| | || || | ||| | | | || || | |||
Sbjct 21840225 ATTCATACCAACCAAGGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAAC 21840284
Query 16168 CGCTTCAATGATTAT--ATCTCTTAC-TACACTATTTAACGGAGGGTTTAATAAGTGTTT 16224
||| ||| | ||| || || || | | || | | || | ||| ||| | |
Sbjct 21840285 CGCATCACAAACTATCGATTTCAAACGTTCTTCATCAAGCTTAGT-TCTAAGAAGACTAT 21840343
Query 16225 AAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGA 16284
| | | | |||||| |||||||| || | |||||||| || || || ||||| ||
Sbjct 21840344 AGA--TCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGA 21840401
Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344
||||| || || ||||||| |||||||| || | ||| ||||| | ||| |||
Sbjct 21840402 GAATGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACC 21840461
Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtt 16404
||| ||||||||||||||||| ||||| || || | || |||| || | || |
Sbjct 21840462 AGAGAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGA 21840521
Query 16405 tttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC 16464
| | | |||||||| ||||||| | |||||||| | ||||| ||| | ||
Sbjct 21840522 T---CCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTC 21840578
Query 16465 TATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAA 16524
||||| ||| | || || | | |||||| | ||| || ||||| || | || |
Sbjct 21840579 GATTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAG 21840638
Query 16525 ACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGC 16584
||||||||| || |||||||||||||| || || || || || || || ||| | |||
Sbjct 21840639 ACTATACATCTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGC 21840698
Query 16585 TTCGGATATTTGTACTTCAGA-GTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCAT 16643
||| || || || || || || | || | || | | || || ||| ||||| |
Sbjct 21840699 TTCTGAGATCTGAACATCGGACATGAATCGGGTC-GAGAGATTCTCCAGAACGATTCCGT 21840757
Query 16644 CGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT- 16702
| || ||||| || || || | |||||| || || | ||||| | || |||
Sbjct 21840758 CTGATGCGGCAAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTG 21840817
Query 16703 --TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAG 16760
||| |||||| | |||| || | |||||| ||||| | ||||| || || |
Sbjct 21840818 AGTTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACG 21840877
Query 16761 CAACAGCCTTTTTATACATTTTCCATAT 16788
| | || || || ||||| | ||| ||
Sbjct 21840878 CTTCGGCTTTCTTGTACATCTCCCAGAT 21840905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462507976145600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |