Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq7 223 3e-53 >seq7 Length=24649197 Score = 223 bits (246), Expect = 3e-53 Identities = 577/868 (66%), Gaps = 16/868 (2%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || ||| ||||| |||| ||||||||| ||||| || || ||||| ||| Sbjct 21840046 GACATAACAGAAGCTTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCT 21840105 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | | ||||| |||||| ||||||||||||| | || ||| ||| | || Sbjct 21840106 TGAAGCGAAATCAATTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACA- 21840164 Query 16049 CCCAATTCCAA-CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107 ||||| || |||||| ||||| || ||||| || || ||||| |||| || |||| Sbjct 21840165 CCCAAGCGCAGTCAATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACG 21840224 Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 ||||| || | || | ||| | || || | ||| | | | || || | ||| Sbjct 21840225 ATTCATACCAACCAAGGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAAC 21840284 Query 16168 CGCTTCAATGATTAT--ATCTCTTAC-TACACTATTTAACGGAGGGTTTAATAAGTGTTT 16224 ||| ||| | ||| || || || | | || | | || | ||| ||| | | Sbjct 21840285 CGCATCACAAACTATCGATTTCAAACGTTCTTCATCAAGCTTAGT-TCTAAGAAGACTAT 21840343 Query 16225 AAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGA 16284 | | | | |||||| |||||||| || | |||||||| || || || ||||| || Sbjct 21840344 AGA--TCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGA 21840401 Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344 ||||| || || ||||||| |||||||| || | ||| ||||| | ||| ||| Sbjct 21840402 GAATGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACC 21840461 Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtt 16404 ||| ||||||||||||||||| ||||| || || | || |||| || | || | Sbjct 21840462 AGAGAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGA 21840521 Query 16405 tttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC 16464 | | | |||||||| ||||||| | |||||||| | ||||| ||| | || Sbjct 21840522 T---CCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTC 21840578 Query 16465 TATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAA 16524 ||||| ||| | || || | | |||||| | ||| || ||||| || | || | Sbjct 21840579 GATTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAG 21840638 Query 16525 ACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGC 16584 ||||||||| || |||||||||||||| || || || || || || || ||| | ||| Sbjct 21840639 ACTATACATCTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGC 21840698 Query 16585 TTCGGATATTTGTACTTCAGA-GTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCAT 16643 ||| || || || || || || | || | || | | || || ||| ||||| | Sbjct 21840699 TTCTGAGATCTGAACATCGGACATGAATCGGGTC-GAGAGATTCTCCAGAACGATTCCGT 21840757 Query 16644 CGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT- 16702 | || ||||| || || || | |||||| || || | ||||| | || ||| Sbjct 21840758 CTGATGCGGCAAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTG 21840817 Query 16703 --TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAG 16760 ||| |||||| | |||| || | |||||| ||||| | ||||| || || | Sbjct 21840818 AGTTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACG 21840877 Query 16761 CAACAGCCTTTTTATACATTTTCCATAT 16788 | | || || || ||||| | ||| || Sbjct 21840878 CTTCGGCTTTCTTGTACATCTCCCAGAT 21840905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462507976145600