Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq7 190 2e-43
>seq7
Length=24649197
Score = 190 bits (210), Expect = 2e-43
Identities = 442/656 (67%), Gaps = 19/656 (3%)
Strand=Plus/Plus
Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971
||| ||||| |||| |||||| || ||||| |||||||||||||||| || || ||
Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119
Query 13972 TTCCATAAAATCAAATGGATTTGTTGACA-TAAACACTTTATCACAACCTAGTTCTAATA 14030
|||||| ||||||| ||| || | ||| | |||| ||| |||| || || | |
Sbjct 21840120 TTCCATCCAATCAAAAGGA-TTACTCACACCATACACCTTACCACACCCAAGCGCAGTCA 21840178
Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090
||| ||||| |||| |||||||| || ||| ||| || |||| ||||||||| | |
Sbjct 21840179 ATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCA 21840238
Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150
||||| || | | ||| ||| | || || | || || | | ||
Sbjct 21840239 AGGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAAT---CTCAACCGCATCACAAA 21840295
Query 14151 TAATCG---TAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 14207
|||| | | | ||| | | | | | | | ||| | || | || ||||| |
Sbjct 21840296 CTATCGATTTCAAACGTTCTTCATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACAAG 21840355
Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 14267
| |||||||| ||||| || || ||||| ||| | |||||| || ||||| | ||| |
Sbjct 21840356 CGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAG 21840415
Query 14268 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATT 14326
|||| || |||||||| || ||||| ||||| | | | || | | || || ||||||||
Sbjct 21840416 GCATTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCAGAGAAGAATATA 21840474
Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-AT 14385
|| ||||| |||||| |||| | ||||| | ||| ||||| | || | ||
Sbjct 21840475 CCTTCAACGCAAGCAAAAGCTACGA----TTCTCTCAGCGAAGCTTTGAGATCCGTTGAT 21840530
Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445
|||||| |||||||||| | |||||| | | | || || ||||| || || |||
Sbjct 21840531 CCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAA 21840590
Query 14446 TAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503
| ||| || |||||| | || ||| ||||| || || | ||| | ||||||||
Sbjct 21840591 GAGATGATCTCTCTCTTTGTTGTCTTTG--ATGTAAGTGTCGAGAAGGAGACTATACATC 21840648
Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14559
||||| || || || || || || || || || || || || | |||||||||
Sbjct 21840649 TCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGA 21840704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482341403593280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |