Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq7 190 2e-43 >seq7 Length=24649197 Score = 190 bits (210), Expect = 2e-43 Identities = 442/656 (67%), Gaps = 19/656 (3%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| ||||| |||| |||||| || ||||| |||||||||||||||| || || || Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACA-TAAACACTTTATCACAACCTAGTTCTAATA 14030 |||||| ||||||| ||| || | ||| | |||| ||| |||| || || | | Sbjct 21840120 TTCCATCCAATCAAAAGGA-TTACTCACACCATACACCTTACCACACCCAAGCGCAGTCA 21840178 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 ||| ||||| |||| |||||||| || ||| ||| || |||| ||||||||| | | Sbjct 21840179 ATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCA 21840238 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 ||||| || | | ||| ||| | || || | || || | | || Sbjct 21840239 AGGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAAT---CTCAACCGCATCACAAA 21840295 Query 14151 TAATCG---TAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 14207 |||| | | | ||| | | | | | | | ||| | || | || ||||| | Sbjct 21840296 CTATCGATTTCAAACGTTCTTCATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACAAG 21840355 Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 14267 | |||||||| ||||| || || ||||| ||| | |||||| || ||||| | ||| | Sbjct 21840356 CGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAG 21840415 Query 14268 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATT 14326 |||| || |||||||| || ||||| ||||| | | | || | | || || |||||||| Sbjct 21840416 GCATTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCAGAGAAGAATATA 21840474 Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-AT 14385 || ||||| |||||| |||| | ||||| | ||| ||||| | || | || Sbjct 21840475 CCTTCAACGCAAGCAAAAGCTACGA----TTCTCTCAGCGAAGCTTTGAGATCCGTTGAT 21840530 Query 14386 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 |||||| |||||||||| | |||||| | | | || || ||||| || || ||| Sbjct 21840531 CCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAA 21840590 Query 14446 TAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 | ||| || |||||| | || ||| ||||| || || | ||| | |||||||| Sbjct 21840591 GAGATGATCTCTCTCTTTGTTGTCTTTG--ATGTAAGTGTCGAGAAGGAGACTATACATC 21840648 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14559 ||||| || || || || || || || || || || || || | ||||||||| Sbjct 21840649 TCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGA 21840704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482341403593280