Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq6 96.9 3e-15
seq7 91.5 1e-13
seq4 91.5 1e-13
seq2 82.4 6e-11
>seq6
Length=25113588
Score = 96.9 bits (106), Expect = 3e-15
Identities = 154/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
||| |||| ||| || ||||||||||| || |||||||| ||||||| || | |||
Sbjct 10622074 AAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCGGCCAAAGTACGGCCATC 10622015
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
||| | ||||| || || |||| | |||||| || || | || | |||||||| ||
Sbjct 10622014 TTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCTAGAGGAATCCCTTCCTTGTC 10621955
Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
||| | | ||| || | ||| |||||| | ||| || | || ||| |
Sbjct 10621954 CTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTAATGGT 10621895
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333
||||| || | |||||| |||||||||||||| | ||||
Sbjct 10621894 CTTGCCAGTGAGTGTTTTCACAAAAATTTGCATCTGCAAAC 10621854
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
||| |||| ||| || ||||||||||| || || ||||| |||| || || || |||
Sbjct 905890 AAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGTCAAGGTACGACCATC 905949
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
||| | ||||| || || |||| | ||| || || ||| || | ||||||||| ||
Sbjct 905950 TTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTC 906009
Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
||| | | ||| || | | | |||||| | ||| || | |||||| |
Sbjct 906010 CTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGT 906069
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| || | |||||| ||||| ||||||||
Sbjct 906070 CTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 906102
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| || | ||||||||| || || || || ||||||||||| ||
Sbjct 905648 CCACCACGAAGACGAAGGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCA 905707
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| | | ||| || | || || || ||| ||||||| || || || ||| ||
Sbjct 905708 AGAGTTCTTCCATCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 905767
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||| || || ||| | |||| ||||| | ||| ||||||| | |||
Sbjct 905768 ATTCCTTCTTTGTCCTGAATCT-TTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAAC 905826
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | || ||| | ||||| |||| || || ||||| || |||||
Sbjct 905827 TTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 905874
>seq7
Length=24649197
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
||| |||| || || ||||||||||| || |||||||| || || | ||| || |||
Sbjct 18993914 AAGAACCAAATGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCTAGGGTTCGACCATC 18993973
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
|| | ||| ||||| || |||||||||| || || ||| | || | ||||||||||
Sbjct 18993974 CTCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGCTGGTCCGCAGGGATTTCTTCCTTATC 18994033
Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291
||| | | || || || | ||| ||||| | ||| ||| | ||| |||
Sbjct 18994034 TTGAATCT-TAGCTTTCACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTAATGG 18994092
Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| |||| || | ||||| ||||| ||||||||
Sbjct 18994093 TTCTGCCAGTAAGGGTTTTCACAAATATTTGCAT 18994126
>seq4
Length=23328337
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
||| |||| ||| || ||||||||||| || || ||||| ||||||| || || |||
Sbjct 15771811 AAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCCAAGGTACGACCATC 15771870
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
||| | ||||| || || |||| | ||| || || ||| || | ||||||||| ||
Sbjct 15771871 TTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTC 15771930
Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
||| | | ||| || | | | |||||| | ||| || | |||||| |
Sbjct 15771931 CTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGT 15771990
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| || | |||||| ||||| ||||||||
Sbjct 15771991 CTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 15772023
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| || | ||||||||| || || || || ||||||||||| ||
Sbjct 15771569 CCACCACGAAGACGAAGGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCA 15771628
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| | | ||| || | || || || ||| ||||||| || || || ||| ||
Sbjct 15771629 AGAGTTCTTCCATCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 15771688
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||||| || || ||| | |||| ||||| | ||| ||||||| | |||
Sbjct 15771689 ATTCCTTCTTTGTCCTGAATCT-TTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAAC 15771747
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | || ||| | ||||| |||| || || ||||| || |||||
Sbjct 15771748 TTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 15771795
>seq2
Length=19320864
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170
|| || |||| || ||||||||||| || || || ||||| || |||| || || |
Sbjct 9126942 CTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCTGCCAAGGTACGACCA 9127001
Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230
||||| || ||||| || || |||| | ||| || || || || | |||||||||
Sbjct 9127002 TCTTCTAACTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGGAGGAATACCTTCCTTA 9127061
Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290
|| ||| | | ||| || | ||| |||||| | ||| || | || |||
Sbjct 9127062 TCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTAATG 9127121
Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
| ||||| || | |||||| || |||||||||||
Sbjct 9127122 GTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 9127156
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170
|| || |||| || ||||||||||| || || || ||||| || |||| || || |
Sbjct 9215723 CTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCTGCCAAGGTACGACCA 9215782
Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230
||||| || ||||| || || |||| | ||| || || || || | |||||||||
Sbjct 9215783 TCTTCTAACTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGGAGGAATACCTTCCTTA 9215842
Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290
|| ||| | | ||| || | ||| |||||| | ||| || | || |||
Sbjct 9215843 TCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTAATG 9215902
Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
| ||||| || | |||||| || |||||||||||
Sbjct 9215903 GTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 9215937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379340782214520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |