Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 3e-15 seq7 91.5 1e-13 seq4 91.5 1e-13 seq2 82.4 6e-11 >seq6 Length=25113588 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || ||||||||||| || |||||||| ||||||| || | ||| Sbjct 10622074 AAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCGGCCAAAGTACGGCCATC 10622015 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | ||||| || || |||| | |||||| || || | || | |||||||| || Sbjct 10622014 TTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCTAGAGGAATCCCTTCCTTGTC 10621955 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | | ||| || | ||| |||||| | ||| || | || ||| | Sbjct 10621954 CTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTAATGGT 10621895 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 ||||| || | |||||| |||||||||||||| | |||| Sbjct 10621894 CTTGCCAGTGAGTGTTTTCACAAAAATTTGCATCTGCAAAC 10621854 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || ||||||||||| || || ||||| |||| || || || ||| Sbjct 905890 AAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGTCAAGGTACGACCATC 905949 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | ||||| || || |||| | ||| || || ||| || | ||||||||| || Sbjct 905950 TTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTC 906009 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | | ||| || | | | |||||| | ||| || | |||||| | Sbjct 906010 CTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGT 906069 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | |||||| ||||| |||||||| Sbjct 906070 CTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 906102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||||||||| || || || || ||||||||||| || Sbjct 905648 CCACCACGAAGACGAAGGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCA 905707 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| || | || || || ||| ||||||| || || || ||| || Sbjct 905708 AGAGTTCTTCCATCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 905767 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||| | |||| ||||| | ||| ||||||| | ||| Sbjct 905768 ATTCCTTCTTTGTCCTGAATCT-TTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAAC 905826 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| | ||||| |||| || || ||||| || ||||| Sbjct 905827 TTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 905874 >seq7 Length=24649197 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| || || ||||||||||| || |||||||| || || | ||| || ||| Sbjct 18993914 AAGAACCAAATGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCTAGGGTTCGACCATC 18993973 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | ||| ||||| || |||||||||| || || ||| | || | |||||||||| Sbjct 18993974 CTCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGCTGGTCCGCAGGGATTTCTTCCTTATC 18994033 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 ||| | | || || || | ||| ||||| | ||| ||| | ||| ||| Sbjct 18994034 TTGAATCT-TAGCTTTCACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTAATGG 18994092 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||| || | ||||| ||||| |||||||| Sbjct 18994093 TTCTGCCAGTAAGGGTTTTCACAAATATTTGCAT 18994126 >seq4 Length=23328337 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || ||||||||||| || || ||||| ||||||| || || ||| Sbjct 15771811 AAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCCAAGGTACGACCATC 15771870 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | ||||| || || |||| | ||| || || ||| || | ||||||||| || Sbjct 15771871 TTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTC 15771930 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | | ||| || | | | |||||| | ||| || | |||||| | Sbjct 15771931 CTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGT 15771990 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | |||||| ||||| |||||||| Sbjct 15771991 CTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 15772023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||||||||| || || || || ||||||||||| || Sbjct 15771569 CCACCACGAAGACGAAGGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCA 15771628 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| || | || || || ||| ||||||| || || || ||| || Sbjct 15771629 AGAGTTCTTCCATCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 15771688 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||| | |||| ||||| | ||| ||||||| | ||| Sbjct 15771689 ATTCCTTCTTTGTCCTGAATCT-TTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAAC 15771747 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| | ||||| |||| || || ||||| || ||||| Sbjct 15771748 TTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 15771795 >seq2 Length=19320864 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 || || |||| || ||||||||||| || || || ||||| || |||| || || | Sbjct 9126942 CTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCTGCCAAGGTACGACCA 9127001 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 ||||| || ||||| || || |||| | ||| || || || || | ||||||||| Sbjct 9127002 TCTTCTAACTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGGAGGAATACCTTCCTTA 9127061 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || ||| | | ||| || | ||| |||||| | ||| || | || ||| Sbjct 9127062 TCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTAATG 9127121 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||||| || | |||||| || ||||||||||| Sbjct 9127122 GTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 9127156 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 || || |||| || ||||||||||| || || || ||||| || |||| || || | Sbjct 9215723 CTGAGAACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCTGCCAAGGTACGACCA 9215782 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 ||||| || ||||| || || |||| | ||| || || || || | ||||||||| Sbjct 9215783 TCTTCTAACTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGGAGGAATACCTTCCTTA 9215842 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || ||| | | ||| || | ||| |||||| | ||| || | || ||| Sbjct 9215843 TCCTGAATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTAATG 9215902 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||||| || | |||||| || ||||||||||| Sbjct 9215903 GTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 9215937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379340782214520