Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7 154 3e-32 >seq7 Length=24649197 Score = 154 bits (170), Expect = 3e-32 Identities = 155/198 (78%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| || |||| || ||| |||| ||||||||| |||||| | | Sbjct 2728453 AGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTAAGC 2728512 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| ||| || |||||||| || |||||||| ||| Sbjct 2728513 TGATGGCACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTTGCAGATGGAGAACTGT 2728572 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || |||||||||| ||| || ||| || | ||||| || || || ||||| Sbjct 2728573 CATGTCAAATGTATCAGCGCTCAGCCGATATG--GGTCTCGGCGTACCGTTTAACATTGC 2728630 Query 35695 ATCATACTCTCTTCTGAC 35712 ||||||||| ||||| || Sbjct 2728631 ATCATACTCCCTTCTTAC 2728648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989575175384680