Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq7 188 7e-43
seq5 109 5e-19
seq4 93.3 4e-14
seq2 82.4 7e-11
>seq7
Length=24649197
Score = 188 bits (208), Expect = 7e-43
Identities = 565/859 (66%), Gaps = 31/859 (4%)
Strand=Plus/Plus
Query 11339 TTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397
|| ||||| |||| ||||| || | || ||||| ||||| ||||||| || || || |
Sbjct 21840061 TTCTGATACTCACCAACTC-TCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119
Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457
||||| | |||||||||| ||| | || || |||| || | | | || ||
Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179
Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517
||| ||||| || || || || || |||||| ||| || || ||||||||| | |
Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCA- 21840238
Query 11518 ATCCACC-GGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576
| ||| |||| ||| | | |||||| | || || | |||||||||| | ||
Sbjct 21840239 AGGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAACTA 21840298
Query 11577 TCGACGTTATAACTTCCTT-----AGATGGTGGATGTAATAAATGTTTAAACATTAAACA 11631
|||| | | ||| | ||| || | | | | ||| || | || | || |||||
Sbjct 21840299 TCGATTTCA-AACGTTCTTCATCAAGCT--TAGTTCTAAGAA--GACTATAGATCAAACA 21840353
Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691
|| |||||||| || | |||||||||||| || | ||| ||||| ||||| | |||
Sbjct 21840354 AGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCC 21840413
Query 11692 GGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751
||||| || |||||||| || | ||| ||||| | | ||| |||||| ||||||||
Sbjct 21840414 AGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATAT 21840473
Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT----- 11806
|| || || ||||| ||||| | ||| || | | | ||| ||||
Sbjct 21840474 ACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGC-GAAGCTTTG-----AGATCCGTT 21840527
Query 11807 -ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865
|||||||| | ||||| || ||||| || | || || || ||||| || |||
Sbjct 21840528 GATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCG 21840587
Query 11866 AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACAT 11925
||| | ||| | | ||| | || ||| | | || || || | | | |||||||||
Sbjct 21840588 AAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACAT 21840647
Query 11926 TTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACA 11985
|| ||||||||||| || || || ||||| ||||| ||||| || || |||||
Sbjct 21840648 CTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGAT 21840707
Query 11986 CTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044
||| ||||| |||| |||| || | |||||| || || || || | |
Sbjct 21840708 CTGAACATCGGACAT-GAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGG 21840766
Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTA---ATTTATCCC 12101
|||| || || || | ||||| || |||| |||||| || | || | || ||||
Sbjct 21840767 CAAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTTTCCC 21840826
Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161
| || |||| || | ||| |||||||| ||||||| || || | | ||
Sbjct 21840827 AGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTT 21840886
Query 12162 GTTTATACATTTTCCAGAT 12180
|| ||||| | ||||||
Sbjct 21840887 TCTTGTACATCTCCCAGAT 21840905
>seq5
Length=21221946
Score = 109 bits (120), Expect = 5e-19
Identities = 275/412 (67%), Gaps = 7/412 (2%)
Strand=Plus/Plus
Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866
|||||||| | ||||| | ||||||||| ||||| || ||||| || || |
Sbjct 3397418 ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGA 3397477
Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926
|| | ||| | | ||| | |||||| | | ||| ||||| | | | |||||||||
Sbjct 3397478 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 3397537
Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986
|| || || |||||||| || || || || || || |||||| || ||||| ||
Sbjct 3397538 TCCGAGTGGATATTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACT 3397597
Query 11987 TGTACATCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045
|| ||||| |||| || || || | |||||| ||| || || ||| | ||
Sbjct 3397598 TGAACATCGGACATGAA-TCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGC 3397656
Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTT-AGTTAATTTATCCC 12101
|| || || || | |||||| || |||| ||| ||| || || | ||| ||||
Sbjct 3397657 GAAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCC 3397715
Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161
| || || | ||||| ||||||||||||| ||||||| || ||| | | ||
Sbjct 3397716 AGTCGCGGTTGTCCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTT 3397775
Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213
||| ||||||| |||||| | | || | ||| ||||| ||| ||| ||
Sbjct 3397776 TTTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCT 3397827
>seq4
Length=23328337
Score = 93.3 bits (102), Expect = 4e-14
Identities = 154/219 (70%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459
||||||| ||||||||| ||||| || | |||||||||||||| |||||||| | |
Sbjct 501689 TTGAGGCCTTGGAGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 501630
Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519
|||| ||| || |||| ||| | ||| ||||| | ||| ||||| | ||
Sbjct 501629 AGACATCAAATGGTAAGTTTGGATTGCGGAATCAATATCGTCCTTGTGGATACCAACAGC 501570
Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT--ATTATTCTGTTTAAGTAGA 38577
|||||||| ||||| ||||| || ||||| | | | | || || || ||| ||
Sbjct 501569 AACCCTCATCAGCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACT-TTCAAG-AGG 501512
Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAAATAACTATAT 38616
|||||| | || | ||||| | |||||| ||| ||||
Sbjct 501511 TACGATCTCTCAAGAGTTTTAAATCCAAAGTAATCATAT 501473
>seq2
Length=19320864
Score = 82.4 bits (90), Expect = 7e-11
Identities = 108/150 (72%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459
||||||| ||||||||| ||||| || | |||||||||||||| ||||| || | |
Sbjct 4060159 TTGAGGCCTTGGAGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACAATCTCTG 4060100
Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519
|||| ||| || |||| ||| || ||| ||||| | |||||| || | |
Sbjct 4060099 AGACATCAAATGGTAAGTTTTGATTGCAGAATCAATATCTTCCATGTGAATGCCAACAAC 4060040
Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTC 38549
|| ||||| ||||| ||||| || |||||
Sbjct 4060039 AACTCTCATGAGCATGTGTTGAGGCCTTTC 4060010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468520723834240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |