Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq7 188 7e-43 seq5 109 5e-19 seq4 93.3 4e-14 seq2 82.4 7e-11 >seq7 Length=24649197 Score = 188 bits (208), Expect = 7e-43 Identities = 565/859 (66%), Gaps = 31/859 (4%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 || ||||| |||| ||||| || | || ||||| ||||| ||||||| || || || | Sbjct 21840061 TTCTGATACTCACCAACTC-TCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 ||||| | |||||||||| ||| | || || |||| || | | | || || Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 ||| ||||| || || || || || |||||| ||| || || ||||||||| | | Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCA- 21840238 Query 11518 ATCCACC-GGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576 | ||| |||| ||| | | |||||| | || || | |||||||||| | || Sbjct 21840239 AGGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAACTA 21840298 Query 11577 TCGACGTTATAACTTCCTT-----AGATGGTGGATGTAATAAATGTTTAAACATTAAACA 11631 |||| | | ||| | ||| || | | | | ||| || | || | || ||||| Sbjct 21840299 TCGATTTCA-AACGTTCTTCATCAAGCT--TAGTTCTAAGAA--GACTATAGATCAAACA 21840353 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 || |||||||| || | |||||||||||| || | ||| ||||| ||||| | ||| Sbjct 21840354 AGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCC 21840413 Query 11692 GGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751 ||||| || |||||||| || | ||| ||||| | | ||| |||||| |||||||| Sbjct 21840414 AGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATAT 21840473 Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT----- 11806 || || || ||||| ||||| | ||| || | | | ||| |||| Sbjct 21840474 ACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGC-GAAGCTTTG-----AGATCCGTT 21840527 Query 11807 -ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 |||||||| | ||||| || ||||| || | || || || ||||| || ||| Sbjct 21840528 GATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCG 21840587 Query 11866 AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACAT 11925 ||| | ||| | | ||| | || ||| | | || || || | | | ||||||||| Sbjct 21840588 AAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACAT 21840647 Query 11926 TTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACA 11985 || ||||||||||| || || || ||||| ||||| ||||| || || ||||| Sbjct 21840648 CTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGAT 21840707 Query 11986 CTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 ||| ||||| |||| |||| || | |||||| || || || || | | Sbjct 21840708 CTGAACATCGGACAT-GAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGG 21840766 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTA---ATTTATCCC 12101 |||| || || || | ||||| || |||| |||||| || | || | || |||| Sbjct 21840767 CAAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTTTCCC 21840826 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 | || |||| || | ||| |||||||| ||||||| || || | | || Sbjct 21840827 AGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTT 21840886 Query 12162 GTTTATACATTTTCCAGAT 12180 || ||||| | |||||| Sbjct 21840887 TCTTGTACATCTCCCAGAT 21840905 >seq5 Length=21221946 Score = 109 bits (120), Expect = 5e-19 Identities = 275/412 (67%), Gaps = 7/412 (2%) Strand=Plus/Plus Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 |||||||| | ||||| | ||||||||| ||||| || ||||| || || | Sbjct 3397418 ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGA 3397477 Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 || | ||| | | ||| | |||||| | | ||| ||||| | | | ||||||||| Sbjct 3397478 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 3397537 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 || || || |||||||| || || || || || || |||||| || ||||| || Sbjct 3397538 TCCGAGTGGATATTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACT 3397597 Query 11987 TGTACATCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 || ||||| |||| || || || | |||||| ||| || || ||| | || Sbjct 3397598 TGAACATCGGACATGAA-TCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGC 3397656 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTT-AGTTAATTTATCCC 12101 || || || || | |||||| || |||| ||| ||| || || | ||| |||| Sbjct 3397657 GAAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCC 3397715 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 | || || | ||||| ||||||||||||| ||||||| || ||| | | || Sbjct 3397716 AGTCGCGGTTGTCCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTT 3397775 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 ||| ||||||| |||||| | | || | ||| ||||| ||| ||| || Sbjct 3397776 TTTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCT 3397827 >seq4 Length=23328337 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||||||||| ||||| || | |||||||||||||| |||||||| | | Sbjct 501689 TTGAGGCCTTGGAGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 501630 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| || |||| ||| | ||| ||||| | ||| ||||| | || Sbjct 501629 AGACATCAAATGGTAAGTTTGGATTGCGGAATCAATATCGTCCTTGTGGATACCAACAGC 501570 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT--ATTATTCTGTTTAAGTAGA 38577 |||||||| ||||| ||||| || ||||| | | | | || || || ||| || Sbjct 501569 AACCCTCATCAGCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACT-TTCAAG-AGG 501512 Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAAATAACTATAT 38616 |||||| | || | ||||| | |||||| ||| |||| Sbjct 501511 TACGATCTCTCAAGAGTTTTAAATCCAAAGTAATCATAT 501473 >seq2 Length=19320864 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||||||||| ||||| || | |||||||||||||| ||||| || | | Sbjct 4060159 TTGAGGCCTTGGAGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACAATCTCTG 4060100 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| || |||| ||| || ||| ||||| | |||||| || | | Sbjct 4060099 AGACATCAAATGGTAAGTTTTGATTGCAGAATCAATATCTTCCATGTGAATGCCAACAAC 4060040 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || ||||| ||||| ||||| || ||||| Sbjct 4060039 AACTCTCATGAGCATGTGTTGAGGCCTTTC 4060010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468520723834240