Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq7 208 1e-48
seq5 122 1e-22
>seq7
Length=24649197
Score = 208 bits (230), Expect = 1e-48
Identities = 606/918 (66%), Gaps = 25/918 (3%)
Strand=Plus/Plus
Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925
||| || || ||||| || | || || ||||| ||||||||||||| | || ||
Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119
Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985
|||||| |||| || ||||| | ||| ||| | || | | || | ||| |
Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179
Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045
|| ||||| || ||||| || || || |||||| |||| |||||| || | |
Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAA 21840239
Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105
| ||||| || | || ||| ||| ||||| ||||| || | ||
Sbjct 21840240 GGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAACTAT 21840299
Query 36106 AGATATTACTGTTTCTTCA-CTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 36164
||| | | ||||||| | | | | | | || | || | |||||||| ||||
Sbjct 21840300 CGATTTCAAACGTTCTTCATCAAGCTTAGTTCTAAGAA-GACTATAGATCAAACAAGCGA 21840358
Query 36165 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 36224
|||| ||||| ||||| |||||||| ||| |||||||| || || |||||||| ||||
Sbjct 21840359 AATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCA 21840418
Query 36225 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCT 36283
||| || || || || | ||| ||||| || |||| | | ||||| ||||| || |||
Sbjct 21840419 TTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATATACCT 21840477
Query 36284 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT--GT--ATCCA 36339
|| || ||||| || | | |||||| | | || || || || |||||
Sbjct 21840478 TCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAGATCCGTTGATCCA 21840533
Query 36340 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399
|| |||||| || || || || | |||||||| || || || || || ||||||
Sbjct 21840534 TTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAG 21840593
Query 36400 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 36459
|| | | | || || | ||||| | || || || | | ||||||||||| || ||
Sbjct 21840594 ATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 21840653
Query 36460 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 36519
|||||| || || || || ||||| ||||||||||| | ||| || | ||||| ||
Sbjct 21840654 ATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGAAC 21840713
Query 36520 TTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 36578
|| | ||| ||||| | | ||| || || |||||||| || ||||| |
Sbjct 21840714 ATC-GGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAAAGA 21840772
Query 36579 ACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGG--TGTTAGTTTATTCCAATC- 36633
| || | || ||||| || || | ||||| |||| || ||||| | ||| ||
Sbjct 21840773 AGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTT-TCCCAGTCG 21840831
Query 36634 --ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691
|||| |||| ||| | ||| |||||||| | ||||| || || || || || ||
Sbjct 21840832 CGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTC 21840888
Query 36692 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTT 36751
|| ||||| | |||||| | | ||||| ||||| || ||| |||| || | | ||
Sbjct 21840889 TTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTT 21840948
Query 36752 TTTGCAAGGATTGGTTCC 36769
|| ||||||||||||
Sbjct 21840949 GGTGTTAGGATTGGTTCC 21840966
>seq5
Length=21221946
Score = 122 bits (134), Expect = 1e-22
Identities = 272/402 (68%), Gaps = 11/402 (3%)
Strand=Plus/Plus
Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 36406
||||| | || ||||| || ||||| || || || || ||| |||||||| | |
Sbjct 3397430 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 3397489
Query 36407 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466
| || || ||||||| | ||| ||||| | | ||||||||||| ||||| || ||
Sbjct 3397490 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATA 3397549
Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 36526
|||||||| || || || || ||||||||| | ||||| | | || || || | |
Sbjct 3397550 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 3397608
Query 36527 CA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 36585
|| ||||| || | ||| || || ||||||||| || || || || || |
Sbjct 3397609 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGAAGAAAGCGAG 3397668
Query 36586 TACATGTTTTATAAAAT-ATTTT-----TCGTTTGGTGTTAGTTTATTCCAATCATTGAT 36639
|||||||| || || | | || ||||| | | | |||| | ||| || | |
Sbjct 3397669 GACATGTTTGATGAAGTGACGTTCACCGTCGTT--GAGATTGTTT-TCCCAGTCGCGGTT 3397725
Query 36640 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 36699
|| | |||| ||| |||||||| | ||||| || ||||| || || ||||| |||||
Sbjct 3397726 GTCCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTTTTGTACAT 3397785
Query 36700 ATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741
| |||||| | | || |||||||| || ||| |||||
Sbjct 3397786 TTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCT 3397827
Score = 98.7 bits (108), Expect = 1e-15
Identities = 280/426 (66%), Gaps = 6/426 (1%)
Strand=Plus/Plus
Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925
||| || || ||||| |||||||| || |||||||||||||| |||| | || |||
Sbjct 3396756 TTTCTGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAG 3396815
Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985
|||||| |||| || ||||| ||||| || | || | || | || |
Sbjct 3396816 TTCCATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTACCCAAGCGCACCCAA 3396875
Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AA 36044
| ||||| || ||||| || ||||| |||||| |||| ||||| || | ||
Sbjct 3396876 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 3396935
Query 36045 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104
|| ||||| || | | ||| ||| || || ||||||||| | |
Sbjct 3396936 CGCGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGACGA 3396994
Query 36105 TAGATATTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGC 36162
| || | || ||||||||| | | | | | || ||| || | | | || ||
Sbjct 3396995 TTGACTTCACGCGTTCTTCACTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCAAGC 3397052
Query 36163 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 36222
||||||||||||||| || ||||| | || |||||||||||||| || ||||| ||
Sbjct 3397053 GAAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCAGG 3397112
Query 36223 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 36282
||| || || || || || ||||| || || || ||| ||| || ||||| || ||
Sbjct 3397113 CATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACC 3397172
Query 36283 TTCTAC 36288
||| ||
Sbjct 3397173 TTCAAC 3397178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658167073896640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |