Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq7 208 1e-48 seq5 122 1e-22 >seq7 Length=24649197 Score = 208 bits (230), Expect = 1e-48 Identities = 606/918 (66%), Gaps = 25/918 (3%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||| || || ||||| || | || || ||||| ||||||||||||| | || || Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 |||||| |||| || ||||| | ||| ||| | || | | || | ||| | Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 || ||||| || ||||| || || || |||||| |||| |||||| || | | Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAA 21840239 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 | ||||| || | || ||| ||| ||||| ||||| || | || Sbjct 21840240 GGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAACTAT 21840299 Query 36106 AGATATTACTGTTTCTTCA-CTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 36164 ||| | | ||||||| | | | | | | || | || | |||||||| |||| Sbjct 21840300 CGATTTCAAACGTTCTTCATCAAGCTTAGTTCTAAGAA-GACTATAGATCAAACAAGCGA 21840358 Query 36165 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 36224 |||| ||||| ||||| |||||||| ||| |||||||| || || |||||||| |||| Sbjct 21840359 AATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCA 21840418 Query 36225 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCT 36283 ||| || || || || | ||| ||||| || |||| | | ||||| ||||| || ||| Sbjct 21840419 TTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATATACCT 21840477 Query 36284 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT--GT--ATCCA 36339 || || ||||| || | | |||||| | | || || || || ||||| Sbjct 21840478 TCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAGATCCGTTGATCCA 21840533 Query 36340 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 || |||||| || || || || | |||||||| || || || || || |||||| Sbjct 21840534 TTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAG 21840593 Query 36400 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 36459 || | | | || || | ||||| | || || || | | ||||||||||| || || Sbjct 21840594 ATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 21840653 Query 36460 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 36519 |||||| || || || || ||||| ||||||||||| | ||| || | ||||| || Sbjct 21840654 ATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGAAC 21840713 Query 36520 TTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 36578 || | ||| ||||| | | ||| || || |||||||| || ||||| | Sbjct 21840714 ATC-GGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAAAGA 21840772 Query 36579 ACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGG--TGTTAGTTTATTCCAATC- 36633 | || | || ||||| || || | ||||| |||| || ||||| | ||| || Sbjct 21840773 AGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTT-TCCCAGTCG 21840831 Query 36634 --ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691 |||| |||| ||| | ||| |||||||| | ||||| || || || || || || Sbjct 21840832 CGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTC 21840888 Query 36692 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTT 36751 || ||||| | |||||| | | ||||| ||||| || ||| |||| || | | || Sbjct 21840889 TTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTT 21840948 Query 36752 TTTGCAAGGATTGGTTCC 36769 || |||||||||||| Sbjct 21840949 GGTGTTAGGATTGGTTCC 21840966 >seq5 Length=21221946 Score = 122 bits (134), Expect = 1e-22 Identities = 272/402 (68%), Gaps = 11/402 (3%) Strand=Plus/Plus Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 36406 ||||| | || ||||| || ||||| || || || || ||| |||||||| | | Sbjct 3397430 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 3397489 Query 36407 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466 | || || ||||||| | ||| ||||| | | ||||||||||| ||||| || || Sbjct 3397490 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATA 3397549 Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 36526 |||||||| || || || || ||||||||| | ||||| | | || || || | | Sbjct 3397550 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 3397608 Query 36527 CA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 36585 || ||||| || | ||| || || ||||||||| || || || || || | Sbjct 3397609 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGAAGAAAGCGAG 3397668 Query 36586 TACATGTTTTATAAAAT-ATTTT-----TCGTTTGGTGTTAGTTTATTCCAATCATTGAT 36639 |||||||| || || | | || ||||| | | | |||| | ||| || | | Sbjct 3397669 GACATGTTTGATGAAGTGACGTTCACCGTCGTT--GAGATTGTTT-TCCCAGTCGCGGTT 3397725 Query 36640 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 36699 || | |||| ||| |||||||| | ||||| || ||||| || || ||||| ||||| Sbjct 3397726 GTCCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTTTTGTACAT 3397785 Query 36700 ATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 | |||||| | | || |||||||| || ||| ||||| Sbjct 3397786 TTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCT 3397827 Score = 98.7 bits (108), Expect = 1e-15 Identities = 280/426 (66%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||| || || ||||| |||||||| || |||||||||||||| |||| | || ||| Sbjct 3396756 TTTCTGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAG 3396815 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 |||||| |||| || ||||| ||||| || | || | || | || | Sbjct 3396816 TTCCATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTACCCAAGCGCACCCAA 3396875 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AA 36044 | ||||| || ||||| || ||||| |||||| |||| ||||| || | || Sbjct 3396876 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 3396935 Query 36045 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104 || ||||| || | | ||| ||| || || ||||||||| | | Sbjct 3396936 CGCGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGACGA 3396994 Query 36105 TAGATATTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGC 36162 | || | || ||||||||| | | | | | || ||| || | | | || || Sbjct 3396995 TTGACTTCACGCGTTCTTCACTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCAAGC 3397052 Query 36163 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 36222 ||||||||||||||| || ||||| | || |||||||||||||| || ||||| || Sbjct 3397053 GAAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCAGG 3397112 Query 36223 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 36282 ||| || || || || || ||||| || || || ||| ||| || ||||| || || Sbjct 3397113 CATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACC 3397172 Query 36283 TTCTAC 36288 ||| || Sbjct 3397173 TTCAAC 3397178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658167073896640