Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 2e-12 >seq7 Length=24649197 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058 ||||||||||| | | || || |||| ||| || ||||||||||| || ||||| Sbjct 2728667 GACGTGAGCGAGAATGCATGTAAGAAGGGAGTATGATGCAATGTTAAACGGTACGCCGAG 2728608 Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAA 21118 ||||| ||||| || | ||| |||| || || ||||| || || || || ||||| Sbjct 2728607 ACCCATATCGGCTGAGCGCTGATACATTTGACATGACAGTTCTCCATCTGCAACATAAAA 2728548 Query 21119 CTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 ||| || | ||| || ||||| || |||||| || || || | || ||||| || Sbjct 2728547 CTGTGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGATCAGAAGGATTCCAAGC 2728488 Query 21179 GCACATAACGATGCGCCGATC 21199 |||| | || || ||||| Sbjct 2728487 CGACATTATAATCCGTCGATC 2728467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427772371390080