Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq7 253 3e-62 seq5 167 3e-36 seq4 98.7 1e-15 >seq7 Length=24649197 Score = 253 bits (280), Expect = 3e-62 Identities = 617/918 (67%), Gaps = 25/918 (3%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| || || ||||| || | || || ||||| |||||||| |||| | || || Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 |||||| ||||||| ||||| | ||| ||| | || | | || | ||| | Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 || ||||| || ||||| || || || |||||| |||| |||||| || | | Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAA 21840239 Query 49848 TTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 49905 | ||||| || |||| || ||| ||| ||||| |||||||| | Sbjct 21840240 GGCACAAGGAAGCGCATCGCA--AACAAACTCTCTCTCAATCTCAACCGCATCACAAACT 21840297 Query 49906 ATAGATCT--AACGGT-TTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACAT 49962 || ||| | |||| | ||| ||| | | | | || || | || | |||||||| Sbjct 21840298 ATCGATTTCAAACGTTCTTCATCAAGCT-TAGTTCTAAGAA--GACTATAGATCAAACAA 21840354 Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 |||||||| ||||| ||||| |||||||| ||| | |||||| || || |||||||| Sbjct 21840355 GCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCA 21840414 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082 ||||||| || || || || | ||| ||||| || ||| ||||| ||||| || Sbjct 21840415 GGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATA 21840474 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCATGTATCCA 50141 ||||| || ||||| || || | |||||| | | || | | | || ||||| Sbjct 21840475 CCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGTTG-ATCCA 21840533 Query 50142 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 || |||||| || || || || | |||||||| || ||||| || || |||||| Sbjct 21840534 TTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAG 21840593 Query 50202 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 50261 || | | | || || | ||||| | ||||| |||| | ||||||||||| || || Sbjct 21840594 ATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 21840653 Query 50262 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 50321 |||||| || || || || || || ||||||||||| | ||| || | ||||| || Sbjct 21840654 ATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGAAC 21840713 Query 50322 TTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 50380 || | ||| ||||| | | ||| || || |||||||| || ||||| | Sbjct 21840714 ATC-GGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAAAGA 21840772 Query 50381 ACGCCAATACATGTTTTATAAA---ATGTTTTTCGTTGGGT-GTTAGTTTATTCCAATC- 50435 | || | || ||||| || || | ||| ||||||| | || ||||| | ||| || Sbjct 21840773 AGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTT-TCCCAGTCG 21840831 Query 50436 --ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 |||| |||| ||| | ||| |||||||| | ||||| || || || || || || Sbjct 21840832 CGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTC 21840888 Query 50494 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 || ||||| | |||||| | | |||||||||||||| ||| |||| || ||| || Sbjct 21840889 TTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTT 21840948 Query 50554 GGTGCAAGGATCGGTTCC 50571 |||| ||||| |||||| Sbjct 21840949 GGTGTTAGGATTGGTTCC 21840966 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| || | ||| | || | || |||||||| ||| || Sbjct 506604 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATGCC 506545 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| |||| |||||||| || || || |||||| | ||||| || || |||||| Sbjct 506544 ATTAGATGCTCCATTGGTACCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGA 506485 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || ||||| ||| ||| || | || || ||| || || ||||| || Sbjct 506484 AACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATAT 506425 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||||||||| ||||| | ||||| ||||| Sbjct 506424 CCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 506383 >seq5 Length=21221946 Score = 167 bits (184), Expect = 3e-36 Identities = 289/414 (70%), Gaps = 7/414 (2%) Strand=Plus/Plus Query 50149 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 50208 ||||| | || ||||| || ||||| |||||||| |||||| |||||||| | | Sbjct 3397430 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 3397489 Query 50209 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 50268 | || || ||||||| | ||||||||||| | ||||||||||| ||||| || || Sbjct 3397490 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATA 3397549 Query 50269 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 50328 |||||||| || ||||| || ||||||||| | ||||| | | || || || | | Sbjct 3397550 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 3397608 Query 50329 CA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 50387 || ||||| ||| | ||| || || ||||||||| || || || || || | Sbjct 3397609 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGAAGAAAGCGAG 3397668 Query 50388 TACATGTTTTATAAA---ATGTTTTTCGTTG-GGTGTTAGTTTATTCCAATCATTGATAT 50443 |||||||| || || | ||| ||| | | | | |||| | ||| || | | | Sbjct 3397669 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCCAGTCGCGGTTGT 3397727 Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 | | |||| |||||||||||| | ||||| || ||||| || || ||||| ||||| | Sbjct 3397728 CCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTTTTGTACATTT 3397787 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTG 50557 |||||| | | || || |||||||| ||| ||||| | ||| |||||| Sbjct 3397788 CCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGGGGTTGGTG 3397841 Score = 109 bits (120), Expect = 8e-19 Identities = 285/428 (67%), Gaps = 10/428 (2%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| || || ||||| |||||||| || ||||||||||||||||||| | || ||| Sbjct 3396756 TTTCTGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAG 3396815 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 |||||| ||||||||||||| |||||| || | || | || | || | Sbjct 3396816 TTCCATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTACCCAAGCGCACCCAA 3396875 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA-TAA 49846 | |||||||| ||||| || ||||| |||||| |||| ||||| || | || Sbjct 3396876 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 3396935 Query 49847 GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 49904 || ||||| || |||| | ||| ||| || || ||||| || | Sbjct 3396936 CGCGCAC-GGAAGCGCGTCGCA--CACAAACTCTCTCTCGATTTCGACCGCGTCGCAGAC 3396992 Query 49905 AATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAACAT 49962 || || | ||| ||||||||| | | | | | || ||| || | | | || Sbjct 3396993 GATTGACTTCACGCGTTCTTCACTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCAA 3397050 Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 |||||||||||||| || || ||||| | || | |||||||||||| || ||||| Sbjct 3397051 GCGAAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCA 3397110 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082 ||||| || || || || || ||||| || || || ||| || || |||||||| Sbjct 3397111 GGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATA 3397170 Query 50083 CCTTCTAC 50090 ||||| || Sbjct 3397171 CCTTCAAC 3397178 >seq4 Length=23328337 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| || | ||| | || | || ||| |||| |||||| Sbjct 502017 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATAGGAACAATACC 501958 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || || ||||||||| | ||||| |||||| || || Sbjct 501957 ATTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGA 501898 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || ||| || | || ||| ||| | || || || || Sbjct 501897 AACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAAT 501838 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 |||||| ||||||||||| ||||| | |||||| ||||| Sbjct 501837 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 501796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718262551061440