Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq7 253 3e-62
seq5 167 3e-36
seq4 98.7 1e-15
>seq7
Length=24649197
Score = 253 bits (280), Expect = 3e-62
Identities = 617/918 (67%), Gaps = 25/918 (3%)
Strand=Plus/Plus
Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727
||| || || ||||| || | || || ||||| |||||||| |||| | || ||
Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119
Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787
|||||| ||||||| ||||| | ||| ||| | || | | || | ||| |
Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179
Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847
|| ||||| || ||||| || || || |||||| |||| |||||| || | |
Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAA 21840239
Query 49848 TTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 49905
| ||||| || |||| || ||| ||| ||||| |||||||| |
Sbjct 21840240 GGCACAAGGAAGCGCATCGCA--AACAAACTCTCTCTCAATCTCAACCGCATCACAAACT 21840297
Query 49906 ATAGATCT--AACGGT-TTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACAT 49962
|| ||| | |||| | ||| ||| | | | | || || | || | ||||||||
Sbjct 21840298 ATCGATTTCAAACGTTCTTCATCAAGCT-TAGTTCTAAGAA--GACTATAGATCAAACAA 21840354
Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022
|||||||| ||||| ||||| |||||||| ||| | |||||| || || ||||||||
Sbjct 21840355 GCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCA 21840414
Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082
||||||| || || || || | ||| ||||| || ||| ||||| ||||| ||
Sbjct 21840415 GGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATA 21840474
Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCATGTATCCA 50141
||||| || ||||| || || | |||||| | | || | | | || |||||
Sbjct 21840475 CCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGTTG-ATCCA 21840533
Query 50142 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201
|| |||||| || || || || | |||||||| || ||||| || || ||||||
Sbjct 21840534 TTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAG 21840593
Query 50202 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 50261
|| | | | || || | ||||| | ||||| |||| | ||||||||||| || ||
Sbjct 21840594 ATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 21840653
Query 50262 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 50321
|||||| || || || || || || ||||||||||| | ||| || | ||||| ||
Sbjct 21840654 ATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGAAC 21840713
Query 50322 TTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 50380
|| | ||| ||||| | | ||| || || |||||||| || ||||| |
Sbjct 21840714 ATC-GGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAAAGA 21840772
Query 50381 ACGCCAATACATGTTTTATAAA---ATGTTTTTCGTTGGGT-GTTAGTTTATTCCAATC- 50435
| || | || ||||| || || | ||| ||||||| | || ||||| | ||| ||
Sbjct 21840773 AGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTT-TCCCAGTCG 21840831
Query 50436 --ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493
|||| |||| ||| | ||| |||||||| | ||||| || || || || || ||
Sbjct 21840832 CGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTC 21840888
Query 50494 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553
|| ||||| | |||||| | | |||||||||||||| ||| |||| || ||| ||
Sbjct 21840889 TTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTT 21840948
Query 50554 GGTGCAAGGATCGGTTCC 50571
|||| ||||| ||||||
Sbjct 21840949 GGTGTTAGGATTGGTTCC 21840966
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|||||| || || | || | ||| || | ||| | || | || |||||||| ||| ||
Sbjct 506604 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATGCC 506545
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213
||| |||| |||||||| || || || |||||| | ||||| || || ||||||
Sbjct 506544 ATTAGATGCTCCATTGGTACCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGA 506485
Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273
| ||| || ||||| ||| ||| || | || || ||| || || ||||| ||
Sbjct 506484 AACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATAT 506425
Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315
||||| ||||||||||| ||||| | ||||| |||||
Sbjct 506424 CCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 506383
>seq5
Length=21221946
Score = 167 bits (184), Expect = 3e-36
Identities = 289/414 (70%), Gaps = 7/414 (2%)
Strand=Plus/Plus
Query 50149 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 50208
||||| | || ||||| || ||||| |||||||| |||||| |||||||| | |
Sbjct 3397430 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 3397489
Query 50209 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 50268
| || || ||||||| | ||||||||||| | ||||||||||| ||||| || ||
Sbjct 3397490 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATA 3397549
Query 50269 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 50328
|||||||| || ||||| || ||||||||| | ||||| | | || || || | |
Sbjct 3397550 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 3397608
Query 50329 CA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 50387
|| ||||| ||| | ||| || || ||||||||| || || || || || |
Sbjct 3397609 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGAAGAAAGCGAG 3397668
Query 50388 TACATGTTTTATAAA---ATGTTTTTCGTTG-GGTGTTAGTTTATTCCAATCATTGATAT 50443
|||||||| || || | ||| ||| | | | | |||| | ||| || | | |
Sbjct 3397669 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCCAGTCGCGGTTGT 3397727
Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503
| | |||| |||||||||||| | ||||| || ||||| || || ||||| ||||| |
Sbjct 3397728 CCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTTTTGTACATTT 3397787
Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTG 50557
|||||| | | || || |||||||| ||| ||||| | ||| ||||||
Sbjct 3397788 CCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGGGGTTGGTG 3397841
Score = 109 bits (120), Expect = 8e-19
Identities = 285/428 (67%), Gaps = 10/428 (2%)
Strand=Plus/Plus
Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727
||| || || ||||| |||||||| || ||||||||||||||||||| | || |||
Sbjct 3396756 TTTCTGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAG 3396815
Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787
|||||| ||||||||||||| |||||| || | || | || | || |
Sbjct 3396816 TTCCATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTACCCAAGCGCACCCAA 3396875
Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA-TAA 49846
| |||||||| ||||| || ||||| |||||| |||| ||||| || | ||
Sbjct 3396876 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 3396935
Query 49847 GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 49904
|| ||||| || |||| | ||| ||| || || ||||| || |
Sbjct 3396936 CGCGCAC-GGAAGCGCGTCGCA--CACAAACTCTCTCTCGATTTCGACCGCGTCGCAGAC 3396992
Query 49905 AATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAACAT 49962
|| || | ||| ||||||||| | | | | | || ||| || | | | ||
Sbjct 3396993 GATTGACTTCACGCGTTCTTCACTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCAA 3397050
Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022
|||||||||||||| || || ||||| | || | |||||||||||| || |||||
Sbjct 3397051 GCGAAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCA 3397110
Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082
||||| || || || || || ||||| || || || ||| || || ||||||||
Sbjct 3397111 GGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATA 3397170
Query 50083 CCTTCTAC 50090
||||| ||
Sbjct 3397171 CCTTCAAC 3397178
>seq4
Length=23328337
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|||||| || || | || | ||| || | ||| | || | || ||| |||| ||||||
Sbjct 502017 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATAGGAACAATACC 501958
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213
||| ||||| ||||| || || || ||||||||| | ||||| |||||| || ||
Sbjct 501957 ATTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGA 501898
Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273
| ||| || || || || ||| || | || ||| ||| | || || || ||
Sbjct 501897 AACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAAT 501838
Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315
|||||| ||||||||||| ||||| | |||||| |||||
Sbjct 501837 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 501796
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718262551061440
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