Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq7 194 2e-44 >seq7 Length=24649197 Score = 194 bits (214), Expect = 2e-44 Identities = 438/652 (67%), Gaps = 11/652 (2%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| ||||| |||| |||||| || ||||| |||||||||||||||| || || || Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119 Query 13640 TTCCATAAAATCAAATGGATTTATTGACA-TAAACACTTTATCACAACCTAGTTCTAATA 13698 |||||| ||||||| ||| ||| | ||| | |||| ||| |||| || || | | Sbjct 21840120 TTCCATCCAATCAAAAGGA-TTACTCACACCATACACCTTACCACACCCAAGCGCAGTCA 21840178 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 ||| |||||||||| ||||||||| || ||| ||| || |||| ||||||||| | | Sbjct 21840179 ATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCA 21840238 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 ||||| || | | ||| ||| | || || || || || | | Sbjct 21840239 AGGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAACTA 21840298 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13878 | | | | | || | | | | | | | ||| | || | || ||||| || | Sbjct 21840299 TCGATTTCAAACGTTCTTCATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACAAGCGA 21840358 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 ||||||| ||||| || || ||||| ||| | |||||| || ||||| | ||| |||| Sbjct 21840359 AATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCA 21840418 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 | || |||||||| || ||||| ||||| | | ||| || || |||||||| || | Sbjct 21840419 TTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTT 21840478 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-ATCCAT 14057 |||| |||||| |||| | ||||| | ||| ||||| | || | |||||| Sbjct 21840479 CAACGCAAGCAAAAGCTACGA----TTCTCTCAGCGAAGCTTTGAGATCCGTTGATCCAT 21840534 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 || |||||||||| | |||||| | | | || || ||||| || || ||| | | Sbjct 21840535 TTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAGA 21840594 Query 14118 TATTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 | || |||||| | || ||| ||||| || || | ||| | |||||||| |||| Sbjct 21840595 TGATCTCTCTCTTTGTTGTCTTTG--ATGTAAGTGTCGAGAAGGAGACTATACATCTCAG 21840652 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 | || || || || || || || || || || || ||| | |||||| || Sbjct 21840653 AATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGA 21840704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479723826366400