Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq7 196 5e-45
>seq7
Length=24649197
Score = 196 bits (216), Expect = 5e-45
Identities = 444/656 (68%), Gaps = 19/656 (3%)
Strand=Plus/Plus
Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427
||| ||||| |||| |||||| || |||||||||||||||||||||| || || ||
Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119
Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486
|||||| |||| || ||||| | ||| | |||| ||| |||| || || | |
Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTC-ACACCATACACCTTACCACACCCAAGCGCAGTCA 21840178
Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546
|||| |||||||||| ||||||||| || ||| ||| || |||| ||||||||| | |
Sbjct 21840179 ATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCA 21840238
Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606
||||| || | ||| ||| | || || | || || | | ||
Sbjct 21840239 AGGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAAT---CTCAACCGCATCACAAA 21840295
Query 13607 TAATC---TTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 13663
||| || | | || | | | | | | | ||| | || | || ||||| |
Sbjct 21840296 CTATCGATTTCAAACGTTCTTCATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACAAG 21840355
Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13723
| |||||||| ||||| || || ||||| ||| | |||||| || ||||| | ||| |
Sbjct 21840356 CGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAG 21840415
Query 13724 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATT 13782
|||| || |||||||| || ||||| ||||| | | | || | | || || ||||||||
Sbjct 21840416 GCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATATA 21840474
Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT-AT 13841
|| ||||| |||||| |||| | || |||| | ||| ||||| | | | ||
Sbjct 21840475 CCTTCAACGCAAGCAAAAGCTACGATTC--TCTC--AGCGAAGCTTTGAGATCCGTTGAT 21840530
Query 13842 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901
|||||| |||||||||| | |||||| | | | || || ||||||||||| ||
Sbjct 21840531 CCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAA 21840590
Query 13902 TAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959
| ||| || |||||| | || ||| ||||| || || | ||| | ||||||||
Sbjct 21840591 GAGATGATCTCTCTCTTTGTTGTCTTTG--ATGTAAGTGTCGAGAAGGAGACTATACATC 21840648
Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14015
||||| || || || || || || || || || || || || | |||||||||
Sbjct 21840649 TCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGA 21840704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478584636277440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |