Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq7 196 5e-45 >seq7 Length=24649197 Score = 196 bits (216), Expect = 5e-45 Identities = 444/656 (68%), Gaps = 19/656 (3%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| ||||| |||| |||||| || |||||||||||||||||||||| || || || Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 |||||| |||| || ||||| | ||| | |||| ||| |||| || || | | Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTC-ACACCATACACCTTACCACACCCAAGCGCAGTCA 21840178 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 |||| |||||||||| ||||||||| || ||| ||| || |||| ||||||||| | | Sbjct 21840179 ATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCA 21840238 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 ||||| || | ||| ||| | || || | || || | | || Sbjct 21840239 AGGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAAT---CTCAACCGCATCACAAA 21840295 Query 13607 TAATC---TTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 13663 ||| || | | || | | | | | | | ||| | || | || ||||| | Sbjct 21840296 CTATCGATTTCAAACGTTCTTCATCAAGCTTAGTTCTAAGAAGACTATAGATCAAACAAG 21840355 Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13723 | |||||||| ||||| || || ||||| ||| | |||||| || ||||| | ||| | Sbjct 21840356 CGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAG 21840415 Query 13724 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATT 13782 |||| || |||||||| || ||||| ||||| | | | || | | || || |||||||| Sbjct 21840416 GCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATATA 21840474 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT-AT 13841 || ||||| |||||| |||| | || |||| | ||| ||||| | | | || Sbjct 21840475 CCTTCAACGCAAGCAAAAGCTACGATTC--TCTC--AGCGAAGCTTTGAGATCCGTTGAT 21840530 Query 13842 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 |||||| |||||||||| | |||||| | | | || || ||||||||||| || Sbjct 21840531 CCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAA 21840590 Query 13902 TAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 | ||| || |||||| | || ||| ||||| || || | ||| | |||||||| Sbjct 21840591 GAGATGATCTCTCTCTTTGTTGTCTTTG--ATGTAAGTGTCGAGAAGGAGACTATACATC 21840648 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14015 ||||| || || || || || || || || || || || || | ||||||||| Sbjct 21840649 TCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGA 21840704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478584636277440