Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 seq1 100 2e-16 seq4 98.7 8e-16 seq5 95.1 9e-15 seq2 87.8 1e-12 seq7 84.2 2e-11 >seq6 Length=25113588 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | |||||||| || | || |||||| || | |||||||| | | Sbjct 22901119 CCTCCACGGAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 22901060 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||| ||||| ||||| || ||||| | ||| || || | || Sbjct 22901059 AAGGTACGACCATCCTCCAACTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 22901000 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | || || || ||| ||||| | ||| || Sbjct 22900999 ATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCTGAACTCTCCACC 22900940 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| ||||| ||||||||||| ||||| Sbjct 22900939 TCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 22900893 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | |||||||||||| | || |||||| || | ||||| || | | Sbjct 22900891 CCTCCACGCAGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 22900832 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | |||| || | ||| || ||||| || ||||| | ||| || || | || Sbjct 22900831 AAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 22900772 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| ||||| || |||| ||||||| || | | ||||| ||| ||| || Sbjct 22900771 ATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTC-AGAGCTCTCCAC 22900713 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| ||||| || | || || || || |||||||| Sbjct 22900712 CTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22900665 >seq1 Length=33132539 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| | | ||||||||| | || ||| || || | |||||||| | Sbjct 10397124 CCTCCTCTCAGACGAAGCACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGCG 10397065 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || ||||||||||| ||||| || || || || || ||||| | || Sbjct 10397064 AGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATTAACCGTTGCTGATCCGGTGGG 10397005 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | |||| || || | | |||||| | || || Sbjct 10397004 ATTCCTTCTTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCAACC 10396945 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 |||| ||||| || || || ||||| |||||||| || || ||||||||||| Sbjct 10396944 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTCTT 10396892 >seq4 Length=23328337 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||||||| || |||||| |||| || | || || ||||| ||| Sbjct 22908920 TCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 22908861 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||||||| ||||| | || | |||||| || || |||| | ||||| || Sbjct 22908860 ATCAATCGCTGCTGATCCGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 22908801 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| | |||||| || | || || || || || ||||| |||||||| Sbjct 22908800 TCGATGGTGTCAGAGGACTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTCACG 22908741 Query 43099 AAAATTTGCATTTTCTT 43115 || || ||||| || || Sbjct 22908740 AAGATCTGCATCTTTTT 22908724 >seq5 Length=21221946 Score = 95.1 bits (104), Expect = 9e-15 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||| |||| | ||||| |||| |||| ||||| ||||| || Sbjct 20743164 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAA 20743105 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||||||||||| || || | || | ||||| || || |||| | |||| || | Sbjct 20743104 AATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATT 20743045 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | |||||| | || || |||| ||||| || || || ||||| |||||||| Sbjct 20743044 GTCGATGGTGTCGGACGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCAC 20742985 Query 43098 AAAAATTTGCATTTT 43112 || || ||||| || Sbjct 20742984 GAAGATCTGCATCTT 20742970 >seq2 Length=19320864 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||||| || ||||| || | ||||||||| | ||| ||||| | || || Sbjct 9126948 ACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCTGCCAAGGTACGACCATCTTCT 9127007 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 || ||||| || || || ||||||| ||| || || | || | |||||| || || ||| Sbjct 9127008 AACTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGGAGGAATACCTTCCTTATC-CTG 9127066 Query 43021 A-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 | || | || || || ||| ||||| ||| ||| || || | || || || | Sbjct 9127067 AATCTTTGCCTTAACATTGTCAATGGTGTCAG-AGCTCTCAACCTCGAGAGTAATGGTCT 9127125 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || || || |||||||| ||||||||||| Sbjct 9127126 TGCCAGTGAGTGTTTTCACGAAAATTTGCAT 9127156 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||||| || ||||| || | ||||||||| | ||| ||||| | || || Sbjct 9215729 ACCAAATGGAGTGTTGATTCCTTCTGGATATTGTAATCTGCCAAGGTACGACCATCTTCT 9215788 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 || ||||| || || || ||||||| ||| || || | || | |||||| || || ||| Sbjct 9215789 AACTGTTTACCAGCGAAGATCAATCTCTGCTGGTCAGGAGGAATACCTTCCTTATC-CTG 9215847 Query 43021 A-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 | || | || || || ||| ||||| ||| ||| || || | || || || | Sbjct 9215848 AATCTTTGCCTTAACATTGTCAATGGTGTCAG-AGCTCTCAACCTCGAGAGTAATGGTCT 9215906 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || || || |||||||| ||||||||||| Sbjct 9215907 TGCCAGTGAGTGTTTTCACGAAAATTTGCAT 9215937 >seq7 Length=24649197 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | ||||| | |||| || ||||||||| | |||||||| | Sbjct 18993672 CCACCACGAAGACGCAACACAAGGTGGAGTGTTGACTCCTTTTGGATGTTGTAATCCGCA 18993731 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | ||| ||||| || || || | || |||||| || | || Sbjct 18993732 AGGGTGCGACCATCCTCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGG 18993791 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | |||||||| || ||| |||| || || ||| ||||| ||| ||| || Sbjct 18993792 ATTCCTTCTTTGTCTTGAATCTTAGCTTTCACGTTGTCAATGGTGTCTG-AGCTCTCAAC 18993850 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||| ||||| |||||||||||||| || ||||| Sbjct 18993851 TTCTAGAGTAATGGTTTTACCGGTAAGAGTTTTCACAAATATCTGCAT 18993898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381366365032368