Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq7 208 1e-48
seq5 168 9e-37
seq2 87.8 2e-12
>seq7
Length=24649197
Score = 208 bits (230), Expect = 1e-48
Identities = 430/630 (68%), Gaps = 21/630 (3%)
Strand=Plus/Plus
Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118
|||||||| |||||||| ||||| ||||| || ||||| ||| |||||||| || ||
Sbjct 21840346 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAAT 21840405
Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177
|||||||| ||||||| || || || || | ||| ||||| || |||| | | |||||
Sbjct 21840406 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGA 21840464
Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237
||||| || ||||| || ||||| || | | |||||| | | || ||
Sbjct 21840465 GAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAG 21840520
Query 42238 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293
|| || ||||| || |||||| || || || || | |||||||| || ||||| |
Sbjct 21840521 ATCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGA 21840580
Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353
| || |||||||| | | | || || | ||||| | || || |||| | ||||
Sbjct 21840581 TTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGAC 21840640
Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413
||||||| || |||||||| || || || || || || ||||||||||| | || |
Sbjct 21840641 TATACATCTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTT 21840700
Query 42414 CGGTAACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472
| | | ||| || || | ||| ||||| | | ||| || || ||||||||
Sbjct 21840701 CTGAGATCTGAACATC-GGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCT 21840759
Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAA---ATATTTTTCGTCCGGTGTTAAT 42529
|| ||||| || || | || ||||| || || | || |||| | | | |
Sbjct 21840760 GATGCGGCAAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAG 21840819
Query 42530 TTATTCCAATC---ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586
|| | ||| || |||| |||| ||| | ||| |||||||| | ||||| || ||
Sbjct 21840820 TTTTCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGAC 21840876
Query 42587 GCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAAT 42646
||||| || || || ||||| | |||||| | | ||||| |||||||| ||| |||
Sbjct 21840877 GCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAAT 21840936
Query 42647 CTATTTGGATTTGGTGCAAGGATCGGTTCC 42676
| || ||| |||||| ||||| ||||||
Sbjct 21840937 CGATCTGGTGTTGGTGTTAGGATTGGTTCC 21840966
>seq5
Length=21221946
Score = 168 bits (186), Expect = 9e-37
Identities = 288/413 (70%), Gaps = 5/413 (1%)
Strand=Plus/Plus
Query 42254 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 42313
||||| | || ||||| || ||||| |||||||| |||||| |||||||| | |
Sbjct 3397430 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 3397489
Query 42314 ttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATG 42373
| || || ||||||| | ||| ||||||| | ||||||||||| || || || ||
Sbjct 3397490 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATA 3397549
Query 42374 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTA 42433
|||||||| || ||||| || ||||||||| | ||||| | || || || || | |
Sbjct 3397550 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 3397608
Query 42434 CA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492
|| ||||| ||| | ||| || || ||||||||| || || || || || |
Sbjct 3397609 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGAAGAAAGCGAG 3397668
Query 42493 TACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAAT-TTATTCCAATCATTGATATC 42549
|||||||| || || | ||| | || || | | || | ||| || | | ||
Sbjct 3397669 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAGTCGCGGTTGTC 3397728
Query 42550 TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATT 42609
| |||| |||||||||||| | ||||| || |||||||| || ||||| ||||| |
Sbjct 3397729 CTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTTTTGTACATTTC 3397788
Query 42610 CCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTG 42662
|||||| | | || ||||||||||| ||| ||||| | ||| ||||||
Sbjct 3397789 CCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGGGGTTGGTG 3397841
Score = 98.7 bits (108), Expect = 1e-15
Identities = 280/426 (66%), Gaps = 6/426 (1%)
Strand=Plus/Plus
Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832
||| || || ||||| |||||||| || ||||||||||| ||||||| | || |||
Sbjct 3396756 TTTCTGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAG 3396815
Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892
|||||| ||||||||||||| |||||| || | || | || | || |
Sbjct 3396816 TTCCATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTACCCAAGCGCACCCAA 3396875
Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AA 41951
| ||||| || | || || ||||| |||||| |||| ||||| || | ||
Sbjct 3396876 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 3396935
Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011
|| ||||| || | | ||| ||| || || ||||||||| | |
Sbjct 3396936 CGCGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGACGA 3396994
Query 42012 TAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGC 42069
| || | || ||||||||| | | | | | || ||| || | | | || ||
Sbjct 3396995 TTGACTTCACGCGTTCTTCACTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCAAGC 3397052
Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129
|||||||||||| || || || || | || |||||||||||||| || ||||| ||
Sbjct 3397053 GAAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCAGG 3397112
Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCC 42189
||| || || || || || ||||| || || || ||| ||| || |||||||| ||
Sbjct 3397113 CATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACC 3397172
Query 42190 TTCTAC 42195
||| ||
Sbjct 3397173 TTCAAC 3397178
>seq2
Length=19320864
Score = 87.8 bits (96), Expect = 2e-12
Identities = 108/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 71917 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATCC 71975
|||||||| || | ||| || | || || || || | | ||| |||| | | | || ||
Sbjct 4060745 TCTCTTTCATACTTTGTGTACAGTCTCTCAAATTC-TGTGCCCCAGCAATCTGCCAAACC 4060687
Query 71976 AGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAA 72035
||| |||||| ||||| | ||||||||||| ||||||| || |||| | ||| ||
Sbjct 4060686 TGGAGCTTCATTAGGACAAAACAATGACCACTTCCCATCATGTTTGACTCTCTCCATGAA 4060627
Query 72036 GAGATCAGGAATCCAAAGAGCTATA 72060
||||| |||||||| |||||||||
Sbjct 4060626 AAGATCTGGAATCCAGAGAGCTATA 4060602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671133361088960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |