Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq7 208 1e-48 seq5 168 9e-37 seq2 87.8 2e-12 >seq7 Length=24649197 Score = 208 bits (230), Expect = 1e-48 Identities = 430/630 (68%), Gaps = 21/630 (3%) Strand=Plus/Plus Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 |||||||| |||||||| ||||| ||||| || ||||| ||| |||||||| || || Sbjct 21840346 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAAT 21840405 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177 |||||||| ||||||| || || || || | ||| ||||| || |||| | | ||||| Sbjct 21840406 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGA 21840464 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237 ||||| || ||||| || ||||| || | | |||||| | | || || Sbjct 21840465 GAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAG 21840520 Query 42238 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 || || ||||| || |||||| || || || || | |||||||| || ||||| | Sbjct 21840521 ATCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGA 21840580 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | || |||||||| | | | || || | ||||| | || || |||| | |||| Sbjct 21840581 TTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGAC 21840640 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 ||||||| || |||||||| || || || || || || ||||||||||| | || | Sbjct 21840641 TATACATCTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTT 21840700 Query 42414 CGGTAACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 | | | ||| || || | ||| ||||| | | ||| || || |||||||| Sbjct 21840701 CTGAGATCTGAACATC-GGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCT 21840759 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAA---ATATTTTTCGTCCGGTGTTAAT 42529 || ||||| || || | || ||||| || || | || |||| | | | | Sbjct 21840760 GATGCGGCAAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAG 21840819 Query 42530 TTATTCCAATC---ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586 || | ||| || |||| |||| ||| | ||| |||||||| | ||||| || || Sbjct 21840820 TTTTCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGAC 21840876 Query 42587 GCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAAT 42646 ||||| || || || ||||| | |||||| | | ||||| |||||||| ||| ||| Sbjct 21840877 GCTTCGGCTTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAAT 21840936 Query 42647 CTATTTGGATTTGGTGCAAGGATCGGTTCC 42676 | || ||| |||||| ||||| |||||| Sbjct 21840937 CGATCTGGTGTTGGTGTTAGGATTGGTTCC 21840966 >seq5 Length=21221946 Score = 168 bits (186), Expect = 9e-37 Identities = 288/413 (70%), Gaps = 5/413 (1%) Strand=Plus/Plus Query 42254 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 42313 ||||| | || ||||| || ||||| |||||||| |||||| |||||||| | | Sbjct 3397430 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 3397489 Query 42314 ttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATG 42373 | || || ||||||| | ||| ||||||| | ||||||||||| || || || || Sbjct 3397490 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATA 3397549 Query 42374 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTA 42433 |||||||| || ||||| || ||||||||| | ||||| | || || || || | | Sbjct 3397550 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 3397608 Query 42434 CA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492 || ||||| ||| | ||| || || ||||||||| || || || || || | Sbjct 3397609 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGAAGAAAGCGAG 3397668 Query 42493 TACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAAT-TTATTCCAATCATTGATATC 42549 |||||||| || || | ||| | || || | | || | ||| || | | || Sbjct 3397669 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAGTCGCGGTTGTC 3397728 Query 42550 TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATT 42609 | |||| |||||||||||| | ||||| || |||||||| || ||||| ||||| | Sbjct 3397729 CTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTTTTGTACATTTC 3397788 Query 42610 CCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTG 42662 |||||| | | || ||||||||||| ||| ||||| | ||| |||||| Sbjct 3397789 CCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGGGGTTGGTG 3397841 Score = 98.7 bits (108), Expect = 1e-15 Identities = 280/426 (66%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||| || || ||||| |||||||| || ||||||||||| ||||||| | || ||| Sbjct 3396756 TTTCTGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAG 3396815 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 |||||| ||||||||||||| |||||| || | || | || | || | Sbjct 3396816 TTCCATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTACCCAAGCGCACCCAA 3396875 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AA 41951 | ||||| || | || || ||||| |||||| |||| ||||| || | || Sbjct 3396876 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 3396935 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 || ||||| || | | ||| ||| || || ||||||||| | | Sbjct 3396936 CGCGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGACGA 3396994 Query 42012 TAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGC 42069 | || | || ||||||||| | | | | | || ||| || | | | || || Sbjct 3396995 TTGACTTCACGCGTTCTTCACTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCAAGC 3397052 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 |||||||||||| || || || || | || |||||||||||||| || ||||| || Sbjct 3397053 GAAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCAGG 3397112 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCC 42189 ||| || || || || || ||||| || || || ||| ||| || |||||||| || Sbjct 3397113 CATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATACC 3397172 Query 42190 TTCTAC 42195 ||| || Sbjct 3397173 TTCAAC 3397178 >seq2 Length=19320864 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 71917 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATCC 71975 |||||||| || | ||| || | || || || || | | ||| |||| | | | || || Sbjct 4060745 TCTCTTTCATACTTTGTGTACAGTCTCTCAAATTC-TGTGCCCCAGCAATCTGCCAAACC 4060687 Query 71976 AGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAA 72035 ||| |||||| ||||| | ||||||||||| ||||||| || |||| | ||| || Sbjct 4060686 TGGAGCTTCATTAGGACAAAACAATGACCACTTCCCATCATGTTTGACTCTCTCCATGAA 4060627 Query 72036 GAGATCAGGAATCCAAAGAGCTATA 72060 ||||| |||||||| ||||||||| Sbjct 4060626 AAGATCTGGAATCCAGAGAGCTATA 4060602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671133361088960