Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7 96.9 5e-15 >seq7 Length=24649197 Score = 96.9 bits (106), Expect = 5e-15 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 |||||| |||||| ||| | |||| |||||| | ||||||||| | ||| | Sbjct 2728450 TCAAGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTA 2728509 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGATGGCAA 70302 | | |||||||| || || || ||| |||||| | |||||||| | | | ||||| | Sbjct 2728510 AGCTGATGGCACTTCCTCCATGCCACATGTTTG-CACAGTTTTATGTTGCA-GATGGAGA 2728567 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 | ||||||| |||||||||| | ||||| ||||| ||||| ||||| |||||||| Sbjct 2728568 ACTGTCATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGCGTACCGTTTAACAT 2728627 Query 70363 TGCA 70366 |||| Sbjct 2728628 TGCA 2728631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741052752784960