Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq7 93.3 4e-14 seq6 86.0 5e-12 >seq7 Length=24649197 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| |||||| | |||| ||| | || |||||||| |||||||||||||| ||| Sbjct 18994584 CCACCTCTCAACCTAAGAACCAAGTGGAGGGTTGACTCCTTCTGAATATTGTAATCAGCC 18994643 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | || ||||||| || |||||||| ||| | |||||||||||||| ||| Sbjct 18994644 AAAGTACGACCGTCCTCAAGTTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCC 18994697 >seq6 Length=25113588 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||| | ||||||||||| ||||| ||||| || |||| ||| || | || Sbjct 22758584 AACACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCATCT 22758643 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || || ||||| || ||| | || | ||||||||| ||| || | ||||||||||| Sbjct 22758644 TCAAGTTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGGATACCCTCTTTGTCC 22758703 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || || ||| || | | ||| || || |||| || | || || || Sbjct 22758704 TGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTGATAGTC 22758763 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || || ||||| || |||||||| Sbjct 22758764 TTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22758795 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | || |||| ||| | ||||||||||| ||||| |||||||| ||| Sbjct 23404189 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAATCAGCC 23404130 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || | || || || || || || || | || | |||||||| ||| || Sbjct 23404129 AAAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 23404070 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| || || ||| || | | ||| || || |||| Sbjct 23404069 ATACCCTCTTTGTCTTGGATCTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCCACC 23404010 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || || || ||||| ||||||||||| ||||| Sbjct 23404009 TCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 23403963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414569283386224