Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq7 93.3 4e-14
seq6 86.0 5e-12
>seq7
Length=24649197
Score = 93.3 bits (102), Expect = 4e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| |||| |||||| | |||| ||| | || |||||||| |||||||||||||| |||
Sbjct 18994584 CCACCTCTCAACCTAAGAACCAAGTGGAGGGTTGACTCCTTCTGAATATTGTAATCAGCC 18994643
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928
| || ||||||| || |||||||| ||| | |||||||||||||| |||
Sbjct 18994644 AAAGTACGACCGTCCTCAAGTTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCC 18994697
>seq6
Length=25113588
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889
||||||| ||| | ||||||||||| ||||| ||||| || |||| ||| || | ||
Sbjct 22758584 AACACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCATCT 22758643
Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949
|| || ||||| || ||| | || | ||||||||| ||| || | |||||||||||
Sbjct 22758644 TCAAGTTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGGATACCCTCTTTGTCC 22758703
Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009
|| || ||| || | | ||| || || |||| || | || || ||
Sbjct 22758704 TGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTGATAGTC 22758763
Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || || || || ||||| || ||||||||
Sbjct 22758764 TTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22758795
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
||||| |||| | || |||| ||| | ||||||||||| ||||| |||||||| |||
Sbjct 23404189 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAATCAGCC 23404130
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| ||| || | || || || || || || || | || | |||||||| ||| ||
Sbjct 23404129 AAAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 23404070
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| ||||||||||| || || ||| || | | ||| || || ||||
Sbjct 23404069 ATACCCTCTTTGTCTTGGATCTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCCACC 23404010
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | || || || || || || ||||| ||||||||||| |||||
Sbjct 23404009 TCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 23403963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414569283386224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |