Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq6 98.7 7e-16 seq2 87.8 1e-12 >seq1 Length=33132539 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||| | | ||||||||| ||||| |||||| ||||| || ||||| Sbjct 10397125 ACCTCCTCTCAGACGAAGCACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGC 10397066 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | |||| |||||||||||||| || || || ||||||||||| ||| | || Sbjct 10397065 GAGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATTAACCGTTGCTGATCCGGTGG 10397006 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| ||| || ||| || | | | || |||| | || || Sbjct 10397005 GATTCCTTCTTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCAAC 10396946 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||| || || |||| || ||||| || || ||||| Sbjct 10396945 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 10396898 >seq6 Length=25113588 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || || || ||| || || || || ||||| || ||| |||| Sbjct 22901104 AACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTACGACCATCC 22901045 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| |||||||| || || ||||||| ||||||||| |||| | |||||| ||||| Sbjct 22901044 TCCAACTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCTTCCTTATCC 22900985 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || || || || | ||| ||| |||| |||||| || | || || || Sbjct 22900984 TGGATCTTGGCCTTCACGTTGTCAATAGTGTCTGAACTCTCCACCTCCAAGGTGATGGTC 22900925 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| | |||||||||||| || ||||| Sbjct 22900924 TTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 22900893 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | | ||||||||| || || ||||||||| || || || || Sbjct 8749007 ACCACCTCTAAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAGC 8749066 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || |||| || | || || |||||||| || | || ||||||||| | || Sbjct 8749067 CAGTGTGCGACCATCCTCTAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGTGG 8749126 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || |||||||| ||| || |||||| | ||| || |||| ||| || Sbjct 8749127 GATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 8749186 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||||||||| || | |||||||||||| |||||||| Sbjct 8749187 CTCTAGGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATTTGCAT 8749234 >seq2 Length=19320864 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | | ||||||||| || || ||||||||| || || ||||| Sbjct 9126473 ACCACCTCTGAGACGAAGCACCAAATGGAGGGTAGACTCTTTTTGGATGTTGTAATCAGC 9126532 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| || | || || || ||||| || | | || || ||| |||| Sbjct 9126533 TAAAGTACGACCATCCTCAAGCTGCTTACCGGCAAAGATGAGTCTCTGTTGATCCGGAGG 9126592 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| ||| ||| ||||| || ||| ||| |||| ||| || Sbjct 9126593 GATACCTTCCTTGTCTTGAATCTTTGCCTTGACATTATCAATAGTGTCTGAGCTCTCAAC 9126652 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || | ||||||||||| || ||||| Sbjct 9126653 CTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 9126700 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | | ||||||||| || || |||||| || ||||| ||||| Sbjct 9126701 ACCACCTCTAAGACGAAGCACCAAATGAAGTGTAGACTCTTTCTGGATATTGTAATCAGC 9126760 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || | || || | || || || ||||| || | || ||||| ||| |||| Sbjct 9126761 GAGTGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGG 9126820 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| ||||| ||| || ||| || || ||| |||||||| || || Sbjct 9126821 GATTCCTTCCTTATCCTGAATCTTAGCTTTAACATTATCAATAGTATCTGAACTTTCAAC 9126880 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || || || ||||||||||| || ||||| Sbjct 9126881 CTCCAAAGTAATGGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCAT 9126928 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | | ||||||||| || || |||||| || ||||| ||||| Sbjct 9215482 ACCACCTCTAAGACGAAGCACCAAATGAAGTGTAGACTCTTTCTGGATATTGTAATCAGC 9215541 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || | || || | || || || ||||| || | || ||||| ||| |||| Sbjct 9215542 GAGTGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGG 9215601 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| ||||| ||| || ||| || || ||| |||||||| || || Sbjct 9215602 GATTCCTTCCTTATCCTGAATCTTAGCTTTAACATTATCAATAGTATCTGAACTTTCAAC 9215661 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || || || ||||||||||| || ||||| Sbjct 9215662 CTCCAAAGTAATGGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCAT 9215709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354774590599008