Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq1 100 2e-16
seq6 98.7 7e-16
seq2 87.8 1e-12
>seq1
Length=33132539
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||||||||||| | | ||||||||| ||||| |||||| ||||| || |||||
Sbjct 10397125 ACCTCCTCTCAGACGAAGCACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGC 10397066
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
| | | |||| |||||||||||||| || || || ||||||||||| ||| | ||
Sbjct 10397065 GAGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATTAACCGTTGCTGATCCGGTGG 10397006
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| |||||||| ||| ||| || ||| || | | | || |||| | || ||
Sbjct 10397005 GATTCCTTCTTTGTCTTGAATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCAAC 10396946
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| | || ||||| || || |||| || ||||| || || |||||
Sbjct 10396945 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 10396898
>seq6
Length=25113588
Score = 98.7 bits (108), Expect = 7e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
|||||||| || || || ||| || || || || ||||| || ||| ||||
Sbjct 22901104 AACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTACGACCATCC 22901045
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
||||| |||||||| || || ||||||| ||||||||| |||| | |||||| |||||
Sbjct 22901044 TCCAACTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCTTCCTTATCC 22900985
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
|| || || || | ||| ||| |||| |||||| || | || || ||
Sbjct 22900984 TGGATCTTGGCCTTCACGTTGTCAATAGTGTCTGAACTCTCCACCTCCAAGGTGATGGTC 22900925
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| ||||| | |||||||||||| || |||||
Sbjct 22900924 TTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 22900893
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||| ||||| | | | ||||||||| || || ||||||||| || || || ||
Sbjct 8749007 ACCACCTCTAAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAGC 8749066
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
| | || |||| || | || || |||||||| || | || ||||||||| | ||
Sbjct 8749067 CAGTGTGCGACCATCCTCTAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGTGG 8749126
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| || |||||||| ||| || |||||| | ||| || |||| ||| ||
Sbjct 8749127 GATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 8749186
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| | || ||||||||||| || | |||||||||||| ||||||||
Sbjct 8749187 CTCTAGGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATTTGCAT 8749234
>seq2
Length=19320864
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||| ||||| | | | ||||||||| || || ||||||||| || || |||||
Sbjct 9126473 ACCACCTCTGAGACGAAGCACCAAATGGAGGGTAGACTCTTTTTGGATGTTGTAATCAGC 9126532
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
||| ||| |||| || | || || || ||||| || | | || || ||| ||||
Sbjct 9126533 TAAAGTACGACCATCCTCAAGCTGCTTACCGGCAAAGATGAGTCTCTGTTGATCCGGAGG 9126592
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| |||||| || ||| ||| ||| ||||| || ||| ||| |||| ||| ||
Sbjct 9126593 GATACCTTCCTTGTCTTGAATCTTTGCCTTGACATTATCAATAGTGTCTGAGCTCTCAAC 9126652
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| | ||||| || || || || | ||||||||||| || |||||
Sbjct 9126653 CTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 9126700
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||| ||||| | | | ||||||||| || || |||||| || ||||| |||||
Sbjct 9126701 ACCACCTCTAAGACGAAGCACCAAATGAAGTGTAGACTCTTTCTGGATATTGTAATCAGC 9126760
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
| | || | || || | || || || ||||| || | || ||||| ||| ||||
Sbjct 9126761 GAGTGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGG 9126820
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| ||||| ||||| ||| || ||| || || ||| |||||||| || ||
Sbjct 9126821 GATTCCTTCCTTATCCTGAATCTTAGCTTTAACATTATCAATAGTATCTGAACTTTCAAC 9126880
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| | ||||| ||||| || || || ||||||||||| || |||||
Sbjct 9126881 CTCCAAAGTAATGGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCAT 9126928
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||| ||||| | | | ||||||||| || || |||||| || ||||| |||||
Sbjct 9215482 ACCACCTCTAAGACGAAGCACCAAATGAAGTGTAGACTCTTTCTGGATATTGTAATCAGC 9215541
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
| | || | || || | || || || ||||| || | || ||||| ||| ||||
Sbjct 9215542 GAGTGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGG 9215601
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| ||||| ||||| ||| || ||| || || ||| |||||||| || ||
Sbjct 9215602 GATTCCTTCCTTATCCTGAATCTTAGCTTTAACATTATCAATAGTATCTGAACTTTCAAC 9215661
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| | ||||| ||||| || || || ||||||||||| || |||||
Sbjct 9215662 CTCCAAAGTAATGGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCAT 9215709
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354774590599008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |