Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 1e-13 seq4 89.7 4e-13 >seq2 Length=19320864 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||| |||||||| ||||| || || |||||||| | | || | || || Sbjct 9126719 CACCAAATGAAGTGTAGACTCTTTCTGGATATTGTAATCAGCGAGTGTGCGACCGTCCTC 9126778 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | || || || ||| | ||||||||||| ||||| || | ||||| || || Sbjct 9126779 AAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTG 9126838 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| || ||| || | ||| || ||| | ||| |||| ||||||||||| Sbjct 9126839 AATCTTAGCTTTAACATTATCAATAGTATCTGAACTTTCAACCTCCAAAGTAATGGTTTT 9126898 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| |||||||| || |||||||| ||||| Sbjct 9126899 GCCAGTCAACGTCTTCACAAAAATCTGCAT 9126928 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||| |||||||| ||||| || || |||||||| | | || | || || Sbjct 9215500 CACCAAATGAAGTGTAGACTCTTTCTGGATATTGTAATCAGCGAGTGTGCGACCGTCCTC 9215559 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | || || || ||| | ||||||||||| ||||| || | ||||| || || Sbjct 9215560 AAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTG 9215619 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| || ||| || | ||| || ||| | ||| |||| ||||||||||| Sbjct 9215620 AATCTTAGCTTTAACATTATCAATAGTATCTGAACTTTCAACCTCCAAAGTAATGGTTTT 9215679 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| |||||||| || |||||||| ||||| Sbjct 9215680 GCCAGTCAACGTCTTCACAAAAATCTGCAT 9215709 >seq4 Length=23328337 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/146 (74%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| |||| |||| | |||||| |||| ||| || ||||| ||||| || ||| Sbjct 16908344 TTGATCATAGTTCCACCTCTGAGCCTCAAGACCAGATGAAGAGTAGACTCTTTCTGGATG 16908285 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 ||||||||| | | || |||||||||||| || || ||| |||| ||||| ||| Sbjct 16908284 TTGTAATCGGCTAAGGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGT 16908225 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | || |||||||| Sbjct 16908224 TGATCAGGTGGAATACCCTCTTTGTC 16908199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419583640851576