Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq2 91.5 1e-13
seq4 89.7 4e-13
>seq2
Length=19320864
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
||||||||| |||||||| ||||| || || |||||||| | | || | || ||
Sbjct 9126719 CACCAAATGAAGTGTAGACTCTTTCTGGATATTGTAATCAGCGAGTGTGCGACCGTCCTC 9126778
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
| || || || ||| | ||||||||||| ||||| || | ||||| || ||
Sbjct 9126779 AAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTG 9126838
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
||| || ||| || | ||| || ||| | ||| |||| |||||||||||
Sbjct 9126839 AATCTTAGCTTTAACATTATCAATAGTATCTGAACTTTCAACCTCCAAAGTAATGGTTTT 9126898
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||| |||||||| || |||||||| |||||
Sbjct 9126899 GCCAGTCAACGTCTTCACAAAAATCTGCAT 9126928
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
||||||||| |||||||| ||||| || || |||||||| | | || | || ||
Sbjct 9215500 CACCAAATGAAGTGTAGACTCTTTCTGGATATTGTAATCAGCGAGTGTGCGACCGTCCTC 9215559
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
| || || || ||| | ||||||||||| ||||| || | ||||| || ||
Sbjct 9215560 AAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTG 9215619
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
||| || ||| || | ||| || ||| | ||| |||| |||||||||||
Sbjct 9215620 AATCTTAGCTTTAACATTATCAATAGTATCTGAACTTTCAACCTCCAAAGTAATGGTTTT 9215679
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||| |||||||| || |||||||| |||||
Sbjct 9215680 GCCAGTCAACGTCTTCACAAAAATCTGCAT 9215709
>seq4
Length=23328337
Score = 89.7 bits (98), Expect = 4e-13
Identities = 108/146 (74%), Gaps = 1/146 (1%)
Strand=Plus/Minus
Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029
|| ||||| |||| |||| | |||||| |||| ||| || ||||| ||||| || |||
Sbjct 16908344 TTGATCATAGTTCCACCTCTGAGCCTCAAGACCAGATGAAGAGTAGACTCTTTCTGGATG 16908285
Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089
||||||||| | | || |||||||||||| || || ||| |||| ||||| |||
Sbjct 16908284 TTGTAATCGGCTAAGGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGT 16908225
Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115
||||| || | || ||||||||
Sbjct 16908224 TGATCAGGTGGAATACCCTCTTTGTC 16908199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419583640851576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |