Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq7 203 3e-47 >seq7 Length=24649197 Score = 203 bits (224), Expect = 3e-47 Identities = 457/680 (67%), Gaps = 9/680 (1%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||||| ||| ||||| || | |||||| || ||||||||||| ||||| ||| Sbjct 21840046 GACATAACAGAAGCTTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCT 21840105 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964 | | |||||| |||||| |||| |||||||| || || ||| || |||| Sbjct 21840106 TGAAGCGAAATCAATTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACAC 21840165 Query 12965 CCTAATTCTAGT-AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACA 13023 || || ||| || || || |||||||||||||| |||||||| |||| || |||| Sbjct 21840166 CC-AAGCGCAGTCAATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACG 21840224 Query 13024 GTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAAC 13083 ||||| || | || ||| | || || | ||| | | | || || ||||| Sbjct 21840225 ATTCATACCAACCAAGGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAAC 21840284 Query 13084 TGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAG--GATTTGATAGATGCTTA 13141 || || |||||| | || ||||||| | || || | || ||| | || Sbjct 21840285 CGCATCACAAACTATCGAT-TTCAAACGTTCT-TCATCAAGCTTAGTTCTAAGAAGACTA 21840342 Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 | |||| ||| || ||||||||||| | ||||| ||||| || | ||||| || Sbjct 21840343 TAGATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAG 21840402 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 ||||| || || ||||| | |||||||| || | ||| ||||| | | ||| ||| Sbjct 21840403 AATGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCA 21840462 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || || ||||| |||||||| ||||| |||| | || ||| | | || | Sbjct 21840463 GAGAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA---GCTTTGA 21840519 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 | | ||||| || | ||||| | |||||||| | || || || |||| Sbjct 21840520 GATCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCG 21840579 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 |||||| ||| | || || | | || || ||||| || ||||| || | | | Sbjct 21840580 ATTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGA 21840639 Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 |||||||| || ||||||||||| || ||||| |||||||| || || || | ||| Sbjct 21840640 CTATACATCTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCT 21840699 Query 13502 TCTGATACCTGAACTTCGGA 13521 ||||| | |||||| ||||| Sbjct 21840700 TCTGAGATCTGAACATCGGA 21840719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430978744191792