Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq7 203 3e-47
>seq7
Length=24649197
Score = 203 bits (224), Expect = 3e-47
Identities = 457/680 (67%), Gaps = 9/680 (1%)
Strand=Plus/Plus
Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904
||||||||||| ||| ||||| || | |||||| || ||||||||||| ||||| |||
Sbjct 21840046 GACATAACAGAAGCTTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCT 21840105
Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964
| | |||||| |||||| |||| |||||||| || || ||| || ||||
Sbjct 21840106 TGAAGCGAAATCAATTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACAC 21840165
Query 12965 CCTAATTCTAGT-AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACA 13023
|| || ||| || || || |||||||||||||| |||||||| |||| || ||||
Sbjct 21840166 CC-AAGCGCAGTCAATAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACG 21840224
Query 13024 GTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAAC 13083
||||| || | || ||| | || || | ||| | | | || || |||||
Sbjct 21840225 ATTCATACCAACCAAGGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAAC 21840284
Query 13084 TGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAG--GATTTGATAGATGCTTA 13141
|| || |||||| | || ||||||| | || || | || ||| | ||
Sbjct 21840285 CGCATCACAAACTATCGAT-TTCAAACGTTCT-TCATCAAGCTTAGTTCTAAGAAGACTA 21840342
Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201
| |||| ||| || ||||||||||| | ||||| ||||| || | ||||| ||
Sbjct 21840343 TAGATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAG 21840402
Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261
||||| || || ||||| | |||||||| || | ||| ||||| | | ||| |||
Sbjct 21840403 AATGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCA 21840462
Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321
|| || ||||| |||||||| ||||| |||| | || ||| | | || |
Sbjct 21840463 GAGAAGAATATACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA---GCTTTGA 21840519
Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381
| | ||||| || | ||||| | |||||||| | || || || ||||
Sbjct 21840520 GATCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCG 21840579
Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441
|||||| ||| | || || | | || || ||||| || ||||| || | | |
Sbjct 21840580 ATTGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGA 21840639
Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501
|||||||| || ||||||||||| || ||||| |||||||| || || || | |||
Sbjct 21840640 CTATACATCTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCT 21840699
Query 13502 TCTGATACCTGAACTTCGGA 13521
||||| | |||||| |||||
Sbjct 21840700 TCTGAGATCTGAACATCGGA 21840719
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430978744191792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |