Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1 123 1e-23 seq8 114 7e-21 seq3 114 7e-21 seq7 113 2e-20 seq2 113 2e-20 seq4 105 3e-18 seq6 102 4e-17 seq5 102 4e-17 >seq1 Length=33132539 Score = 123 bits (136), Expect = 1e-23 Identities = 85/96 (89%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 11436 GAATTAATAAA--AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 |||| |||||| ||| |||| ||||||||| | | |||||||| |||||||||||||| Sbjct 5506357 GAATCAATAAATAAAAACAAACTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTA 5506416 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||||||||||||||||||| Sbjct 5506417 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 5506452 Score = 118 bits (130), Expect = 6e-22 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| |||||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 2346666 TAAAAAAAACAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGA 2346607 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 2346606 CGCTCTAACCAACTGAGCTAATGGGCC 2346580 >seq8 Length=22951293 Score = 114 bits (126), Expect = 7e-21 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 22718759 AAAATAAAGATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 22718818 Query 11506 TCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537 ||| |||||||||||||||||||| | || || Sbjct 22718819 TCTAACCAACTGAGCTAATGGGCCTTTGATGA 22718850 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 17472072 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 17472013 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 17472012 TGAGCTAATGGGCC 17471999 >seq3 Length=24464547 Score = 114 bits (126), Expect = 7e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 22279668 AAAAAGCAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 22279609 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||| ||| Sbjct 22279608 CTCTAACCAACTGAGCTAATGAGCC 22279584 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 565252 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 565193 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 565192 TGAGCTAATGGGCC 565179 >seq7 Length=24649197 Score = 113 bits (124), Expect = 2e-20 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 861275 AAACTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 861216 Query 11512 CAACTGAGCTAATGGGCCGTC 11532 |||||||||||||||||| || Sbjct 861215 CAACTGAGCTAATGGGCCATC 861195 Score = 109 bits (120), Expect = 3e-19 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| | | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 23566049 AAAAAAAAAAGATAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 23566108 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||| ||||| Sbjct 23566109 GACGCTCTAACCAACTGAGCTAACGGGCC 23566137 Score = 105 bits (116), Expect = 3e-18 Identities = 86/104 (83%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 11428 GAAATATAGAATTAAT--AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 |||| | |||| ||| ||| ||||||| || |||||| | | |||||||| |||| | Sbjct 861469 GAAACACAGAAAAAATGTAAACAATCAAAGTGTCCCATGCAGGTTTCGAACCTGCGACAT 861410 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||| ||| |||||||||||||||||||| Sbjct 861409 TCGCGTTATTAGCACTACGTTCTAACCAACTGAGCTAATGGGCC 861366 Score = 104 bits (114), Expect = 1e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 6691083 AAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 6691024 Query 11512 CAACTGAGCTAATGGGCCGTC 11532 ||||||||||||| |||| || Sbjct 6691023 CAACTGAGCTAATAGGCCATC 6691003 >seq2 Length=19320864 Score = 113 bits (124), Expect = 2e-20 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 13429885 ATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 13429826 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 13429825 ACTGAGCTAATGGGCC 13429810 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || ||||||||||| |||||||||||||||||||||||||||| || Sbjct 13583069 AAAATGGCCTATACGGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 13583010 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 13583009 CAACTGAGCTAATAGGCC 13582992 Score = 96.9 bits (106), Expect = 2e-15 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | | ||||| || | ||||||||||| |||||| |||||||||||||| Sbjct 13589778 ATAAAAAGTAA---TGGCCTATACAGGGATCGAACCTGTGACCTTTGCGTTATTAGCACG 13589722 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 13589721 ACGCTCTAACCAACTGAGCTAATAGGCC 13589694 >seq4 Length=23328337 Score = 105 bits (116), Expect = 3e-18 Identities = 79/92 (86%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| |||| |||| || | ||||||||||| |||||||||||||||||||| Sbjct 852651 AAGAAAAAAAGAAAT-GGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCAC 852709 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||| ||||||||||||||| |||| || Sbjct 852710 GACGCTCTAACCAACTGAGCTAATAGGCCATC 852741 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||| || | ||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 927984 AAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACC 927925 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 927924 AACTGAGCTAATAGGCC 927908 >seq6 Length=25113588 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 6450658 AAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 6450599 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 6450598 CAACTGAGCTAATAGGCC 6450581 >seq5 Length=21221946 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 2392639 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 2392698 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 2392699 CAACTGAGCTAATAGGCC 2392716 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261488981900896