Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq8 154 2e-33
seq1 154 2e-33
seq500 152 8e-33
seq4 136 6e-28
seq5 120 5e-23
>seq8
Length=22951293
Score = 154 bits (170), Expect = 2e-33
Identities = 180/243 (74%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||||||||||||||| || || || | |||||||| | |||||||
Sbjct 19218104 GAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGAAGATTGGCTCGTAGAGGTGGAG 19218163
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| | ||| || |||| || |||| ||||| || | |||||||| |||
Sbjct 19218164 TCAAGCGTATTAGTGGTCTGATCTACGAGGAGACTCGTGGGGTCCTCAAGATCTTTCTCG 19218223
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| || | ||||||| | || ||||||||||||| | |||||||| |||
Sbjct 19218224 AGAACGTGATTCGTGATGCTGTTACTTACACCGAGCACGCTAGGAGGAAGACTGTGACCG 19218283
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
|||||||| | || || || | || | ||||| | | |||| ||||| || |||
Sbjct 19218284 CCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTCTTTACGGTTTCGGCGGTT 19218343
Query 16698 AAT 16700
|||
Sbjct 19218344 AAT 19218346
Score = 152 bits (168), Expect = 8e-33
Identities = 153/199 (77%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||||||||||||||| || || || | ||||||||| | |||||||
Sbjct 19338301 GAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGACTGGCTCGTAGAGGTGGAG 19338242
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| || ||| || |||| || |||| ||||| || |||||||||| |||
Sbjct 19338241 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGCGTCCTGAAGATCTTTCTCG 19338182
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| || | ||| ||| | || ||||||||||| | | |||||||| |||
Sbjct 19338181 AGAACGTGATTCGTGACGCTGTTACTTACACCGAGCACGCCAGGAGGAAGACTGTGACCG 19338122
Query 16638 CCATGGATATCGTCTATGC 16656
|||||||| | || || ||
Sbjct 19338121 CCATGGATGTTGTTTACGC 19338103
>seq1
Length=33132539
Score = 154 bits (170), Expect = 2e-33
Identities = 181/245 (74%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||||||||| ||||| ||||||||||| || || |||||||| |||||| | ||||| |
Sbjct 2816781 GAGATAACATTCAAGGTATCACCAAGCCTGCCATTCGTCGTCTTGCTCGTAGAGGTGGTG 2816840
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| || ||| | |||| ||||||| | | ||| | ||||||||||||
Sbjct 2816841 TCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTCCTCG 2816900
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || |||| ||| || | ||| || |||||||| | | ||||| || ||
Sbjct 2816901 AGAATGTCATCCGTGACGCCGTTACCTACACTGAGCACGCCAGGAGGAAGACGGTGACTG 2816960
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
|||||||| | ||||| || ||||| | ||||| || | | || ||||| || |||
Sbjct 2816961 CCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGCACTCTCTACGGTTTCGGCGGTT 2817020
Query 16698 AATCT 16702
|||||
Sbjct 2817021 AATCT 2817025
Score = 141 bits (156), Expect = 1e-29
Identities = 177/243 (73%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||| ||||| || |||||||| || || |||||||| ||||| | ||||| |||
Sbjct 2890713 GATAACATTCAAGGTATAACCAAGCCTGCCATTCGTCGTCTTGCTCGCAGAGGTGGTGTC 2890654
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || ||| | |||| ||||||| | | ||| | |||||||||||| ||
Sbjct 2890653 AAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTCCTCGAG 2890594
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || |||| ||| || | ||| || |||||||| | | ||||| || || ||
Sbjct 2890593 AATGTCATCCGTGACGCCGTTACCTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCC 2890534
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | ||||| || ||||| | ||||| || | | || ||||| || |||||
Sbjct 2890533 ATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGCACTCTCTACGGTTTCGGCGGTTAA 2890474
Query 16700 TCT 16702
|||
Sbjct 2890473 TCT 2890471
>seq500
Length=4495
Score = 152 bits (168), Expect = 8e-33
Identities = 153/199 (77%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||||||||||||||| || || || | ||||||||| | |||||||
Sbjct 4312 GAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGACTGGCTCGTAGAGGTGGAG 4253
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| || ||| || |||| || |||| ||||| || |||||||||| |||
Sbjct 4252 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGCGTCCTGAAGATCTTTCTCG 4193
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| || | ||| ||| | || ||||||||||| | | |||||||| |||
Sbjct 4192 AGAACGTGATTCGTGACGCTGTTACTTACACCGAGCACGCCAGGAGGAAGACTGTGACCG 4133
Query 16638 CCATGGATATCGTCTATGC 16656
|||||||| | || || ||
Sbjct 4132 CCATGGATGTTGTTTACGC 4114
>seq4
Length=23328337
Score = 136 bits (150), Expect = 6e-28
Identities = 174/240 (73%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||||| || ||||| ||||||||||| |||||||| || |||||||| ||||| | ||
Sbjct 13006534 TCTTCGTGACAACATTCAAGGAATCACAAAGCCAGCGATTCGTCGTCTTGCTCGAAGAGG 13006475
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|| || ||| | || ||||||| |||||||||| | | | ||| |||||||||||
Sbjct 13006474 AGGTGTGAAGAGAATCAGTGGATTGATCTATGAAGAAACGAGAGGTGTGTTGAAGATCTT 13006415
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
||| ||| || || |||||| | ||||| ||||| || | | ||||| ||
Sbjct 13006414 TCTCGAGAATGTGATTAGAGATGCTGTTACTTATACAGAGCATGCGAGGAGGAAGACAGT 13006355
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| | |||||| | || ||||| ||||| | ||||| | | ||||||| |||||
Sbjct 13006354 GACTGCAATGGATGTTGTTTATGCTTTGAAGAGACAAGGAAGAACTCTTTATGGATTTGG 13006295
>seq5
Length=21221946
Score = 120 bits (132), Expect = 5e-23
Identities = 146/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||||||||||||||||||||| ||||| || || || | |||||||| | |||||||
Sbjct 12580585 GAGATAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTGGAG 12580526
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| || ||| || |||| || |||| |||| ||| | |||||||| |
Sbjct 12580525 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGCGTTCTCAAGATCTTTTTGG 12580466
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||||||| ||| || | || || ||||||||| | ||||| || ||
Sbjct 12580465 AGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTCGGAGAAAGACGGTGACTG 12580406
Query 16638 CCATGGATATCGTCTATGC 16656
| |||||| | || |||||
Sbjct 12580405 CTATGGATGTTGTTTATGC 12580387
Score = 102 bits (112), Expect = 1e-17
Identities = 142/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||||||||| ||||| || || || | |||||||| | ||||| |
Sbjct 12303643 GAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTGGCG 12303702
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| | ||| || |||| || |||| |||| || | |||||||| |
Sbjct 12303703 TTAAGCGTATTAGTGGTCTGATCTACGAGGAGACACGTGGCGTACTCAAGATCTTTTTGG 12303762
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||||| | ||| || | ||||| ||||||||| | ||||| || ||
Sbjct 12303763 AGAATGTTATTCGTGACGCCGTTACTTATACTGAGCACGCTCGGAGAAAGACGGTGACTG 12303822
Query 16638 CCATGGATATCGTCTATGC 16656
| |||||| |||| |||||
Sbjct 12303823 CTATGGATGTCGTTTATGC 12303841
Score = 102 bits (112), Expect = 1e-17
Identities = 157/224 (70%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||| | ||||| | | ||| ||||| ||||||||||| || ||||| || || ||
Sbjct 16718414 GCCAAGAGACATCGGAAAGTTCTCCGAGACAACATCCAAGGGATTACCAAACCTGCGATT 16718355
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||| |||| | | || || || || ||| || ||| ||| |||| ||||||| |
Sbjct 16718354 CGTCGATTGGCGAGAAGAGGAGGTGTGAAACGTATCAGTGGTTTGATCTACGAAGAGACT 16718295
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| | |||||||| ||| ||| ||| || | ||| || | || || |||
Sbjct 16718294 CGCGGCGTTCTCAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAG 16718235
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656
|||||| || || || || || | ||||| |||| || ||
Sbjct 16718234 CACGCTCGCCGGAAAACAGTTACGGCGATGGACGTCGTTTACGC 16718191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074563642328
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