Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8 154 2e-33 seq1 154 2e-33 seq500 152 8e-33 seq4 136 6e-28 seq5 120 5e-23 >seq8 Length=22951293 Score = 154 bits (170), Expect = 2e-33 Identities = 180/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || | |||||||| | ||||||| Sbjct 19218104 GAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGAAGATTGGCTCGTAGAGGTGGAG 19218163 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| | ||| || |||| || |||| ||||| || | |||||||| ||| Sbjct 19218164 TCAAGCGTATTAGTGGTCTGATCTACGAGGAGACTCGTGGGGTCCTCAAGATCTTTCTCG 19218223 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||||||| | || ||||||||||||| | |||||||| ||| Sbjct 19218224 AGAACGTGATTCGTGATGCTGTTACTTACACCGAGCACGCTAGGAGGAAGACTGTGACCG 19218283 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || || || | || | ||||| | | |||| ||||| || ||| Sbjct 19218284 CCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTCTTTACGGTTTCGGCGGTT 19218343 Query 16698 AAT 16700 ||| Sbjct 19218344 AAT 19218346 Score = 152 bits (168), Expect = 8e-33 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || | ||||||||| | ||||||| Sbjct 19338301 GAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGACTGGCTCGTAGAGGTGGAG 19338242 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| || |||| ||||| || |||||||||| ||| Sbjct 19338241 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGCGTCCTGAAGATCTTTCTCG 19338182 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||| ||| | || ||||||||||| | | |||||||| ||| Sbjct 19338181 AGAACGTGATTCGTGACGCTGTTACTTACACCGAGCACGCCAGGAGGAAGACTGTGACCG 19338122 Query 16638 CCATGGATATCGTCTATGC 16656 |||||||| | || || || Sbjct 19338121 CCATGGATGTTGTTTACGC 19338103 >seq1 Length=33132539 Score = 154 bits (170), Expect = 2e-33 Identities = 181/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| ||||||||||| || || |||||||| |||||| | ||||| | Sbjct 2816781 GAGATAACATTCAAGGTATCACCAAGCCTGCCATTCGTCGTCTTGCTCGTAGAGGTGGTG 2816840 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| | |||| ||||||| | | ||| | |||||||||||| Sbjct 2816841 TCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTCCTCG 2816900 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || |||| ||| || | ||| || |||||||| | | ||||| || || Sbjct 2816901 AGAATGTCATCCGTGACGCCGTTACCTACACTGAGCACGCCAGGAGGAAGACGGTGACTG 2816960 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | ||||| || ||||| | ||||| || | | || ||||| || ||| Sbjct 2816961 CCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGCACTCTCTACGGTTTCGGCGGTT 2817020 Query 16698 AATCT 16702 ||||| Sbjct 2817021 AATCT 2817025 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| ||||| || |||||||| || || |||||||| ||||| | ||||| ||| Sbjct 2890713 GATAACATTCAAGGTATAACCAAGCCTGCCATTCGTCGTCTTGCTCGCAGAGGTGGTGTC 2890654 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | |||| ||||||| | | ||| | |||||||||||| || Sbjct 2890653 AAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTCCTCGAG 2890594 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||| || | ||| || |||||||| | | ||||| || || || Sbjct 2890593 AATGTCATCCGTGACGCCGTTACCTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCC 2890534 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | ||||| || ||||| | ||||| || | | || ||||| || ||||| Sbjct 2890533 ATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGCACTCTCTACGGTTTCGGCGGTTAA 2890474 Query 16700 TCT 16702 ||| Sbjct 2890473 TCT 2890471 >seq500 Length=4495 Score = 152 bits (168), Expect = 8e-33 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || | ||||||||| | ||||||| Sbjct 4312 GAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGACTGGCTCGTAGAGGTGGAG 4253 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| || |||| ||||| || |||||||||| ||| Sbjct 4252 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGCGTCCTGAAGATCTTTCTCG 4193 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||| ||| | || ||||||||||| | | |||||||| ||| Sbjct 4192 AGAACGTGATTCGTGACGCTGTTACTTACACCGAGCACGCCAGGAGGAAGACTGTGACCG 4133 Query 16638 CCATGGATATCGTCTATGC 16656 |||||||| | || || || Sbjct 4132 CCATGGATGTTGTTTACGC 4114 >seq4 Length=23328337 Score = 136 bits (150), Expect = 6e-28 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||| ||||||||||| |||||||| || |||||||| ||||| | || Sbjct 13006534 TCTTCGTGACAACATTCAAGGAATCACAAAGCCAGCGATTCGTCGTCTTGCTCGAAGAGG 13006475 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||| | || ||||||| |||||||||| | | | ||| ||||||||||| Sbjct 13006474 AGGTGTGAAGAGAATCAGTGGATTGATCTATGAAGAAACGAGAGGTGTGTTGAAGATCTT 13006415 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| || || |||||| | ||||| ||||| || | | ||||| || Sbjct 13006414 TCTCGAGAATGTGATTAGAGATGCTGTTACTTATACAGAGCATGCGAGGAGGAAGACAGT 13006355 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||| ||||| | ||||| | | ||||||| ||||| Sbjct 13006354 GACTGCAATGGATGTTGTTTATGCTTTGAAGAGACAAGGAAGAACTCTTTATGGATTTGG 13006295 >seq5 Length=21221946 Score = 120 bits (132), Expect = 5e-23 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||||||||||||||| ||||| || || || | |||||||| | ||||||| Sbjct 12580585 GAGATAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTGGAG 12580526 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| || |||| |||| ||| | |||||||| | Sbjct 12580525 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGCGTTCTCAAGATCTTTTTGG 12580466 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||||||| ||| || | || || ||||||||| | ||||| || || Sbjct 12580465 AGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTCGGAGAAAGACGGTGACTG 12580406 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | || ||||| Sbjct 12580405 CTATGGATGTTGTTTATGC 12580387 Score = 102 bits (112), Expect = 1e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || || | |||||||| | ||||| | Sbjct 12303643 GAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTGGCG 12303702 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||| || |||| || |||| |||| || | |||||||| | Sbjct 12303703 TTAAGCGTATTAGTGGTCTGATCTACGAGGAGACACGTGGCGTACTCAAGATCTTTTTGG 12303762 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||||| | ||| || | ||||| ||||||||| | ||||| || || Sbjct 12303763 AGAATGTTATTCGTGACGCCGTTACTTATACTGAGCACGCTCGGAGAAAGACGGTGACTG 12303822 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| |||| ||||| Sbjct 12303823 CTATGGATGTCGTTTATGC 12303841 Score = 102 bits (112), Expect = 1e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| ||||| ||||||||||| || ||||| || || || Sbjct 16718414 GCCAAGAGACATCGGAAAGTTCTCCGAGACAACATCCAAGGGATTACCAAACCTGCGATT 16718355 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||| | | || || || || ||| || ||| ||| |||| ||||||| | Sbjct 16718354 CGTCGATTGGCGAGAAGAGGAGGTGTGAAACGTATCAGTGGTTTGATCTACGAAGAGACT 16718295 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | |||||||| ||| ||| ||| || | ||| || | || || ||| Sbjct 16718294 CGCGGCGTTCTCAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAG 16718235 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| || || || || || | ||||| |||| || || Sbjct 16718234 CACGCTCGCCGGAAAACAGTTACGGCGATGGACGTCGTTTACGC 16718191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074563642328