Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_006882.2
Length=45176
Score E
Sequences producing significant alignments: (Bits) Value
seq696 563 2e-156
seq74 187 7e-43
seq2 114 4e-21
>seq696
Length=154923
Score = 563 bits (624), Expect = 2e-156
Identities = 725/995 (73%), Gaps = 4/995 (0%)
Strand=Plus/Minus
Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349
|| ||| | ||| | || || || || ||||| ||||| | || |||||||| || |
Sbjct 1370 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1311
Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409
||||| ||| |||| | | || ||| | ||||| |||| || || || || ||
Sbjct 1310 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1251
Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469
|| |||||||| ||||| || ||||| || ||||| || || | | ||||||||||||
Sbjct 1250 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1191
Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529
|||||||| || || | |||| | || || || || |||| ||||| ||||||
Sbjct 1190 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1131
Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589
|||||||| | | | ||||| ||| |||||||||| ||||| ||| |||| ||||
Sbjct 1130 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1071
Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649
| ||||| ||| | || ||||| || ||| | |||||||||| || | |
Sbjct 1070 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1011
Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709
| || ||| | || ||||| || |||||| |||| || | |||| || ||||
Sbjct 1010 CTGGGTATGCGTCCTTGGATTGCGGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 951
Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768
|| ||||| | | || ||| |||| || || |||||| ||||||||||||||| || ||
Sbjct 950 GT-TTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 892
Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828
|||||||||||| ||||||||| | |||||||| || || ||||| || |||||||| ||
Sbjct 891 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 832
Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888
|| |||||| | ||||| ||||| |||||||| || || ||||| ||||||||| ||
Sbjct 831 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGG 772
Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948
||||| ||||| | |||| |||||| || || ||| ||| || | ||
Sbjct 771 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 712
Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008
|| | ||||||||||| ||||| || || || ||||| ||||| ||||| || |||||
Sbjct 711 TTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 652
Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068
||||||| || ||||||||| |||||| ||||||||||||||||||||||| | ||
Sbjct 651 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 592
Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128
||| || || || || || ||| |||| | | || || | ||||||||||||||
Sbjct 591 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 532
Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187
||| |||||||| || || ||||| |||||||||||| ||||| ||| | || |
Sbjct 531 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA-GGACGTGTTATTAATA 473
Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247
| ||||||||| | | || | |||||||| || | ||||||||||| || || ||||
Sbjct 472 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 413
Query 20248 CTCATAACTTCCCACTTGATTTAGCTTCGGCTGAG 20282
|||| |||||||| || || ||||| | | ||||
Sbjct 412 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 378
>seq74
Length=21493
Score = 187 bits (206), Expect = 7e-43
Identities = 239/328 (73%), Gaps = 11/328 (3%)
Strand=Plus/Minus
Query 19956 TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTG 20015
||||| ||||| ||| | || || || ||||| ||||| || || || ||||| |||||
Sbjct 10994 TTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTG 10935
Query 20016 ATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTC 20075
|| || | |||||| ||||||||||||||||||||||| | || |||
Sbjct 10934 ATCTTCCG---------TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGG 10884
Query 20076 CCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAAT 20135
|| || || || || ||| |||| | | || || ||||||||||||||||||| |||
Sbjct 10883 CCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAAT 10824
Query 20136 GGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGC 20194
||||| || || ||||| |||||||||||| ||||| || | | || || |||||
Sbjct 10823 GGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTG-TTATTAATACTTGGGC 10765
Query 20195 TGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAA 20254
|||| | | || | ||||| | || | ||||||||||| || || |||||||| ||
Sbjct 10764 TGATATTATTAACCGTACTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAA 10705
Query 20255 CTTCCCACTTGATTTAGCTTCGGCTGAG 20282
|||||| || || ||||| | | ||||
Sbjct 10704 CTTCCCTCTAGACCTAGCTGCTGTTGAG 10677
>seq2
Length=19320864
Score = 114 bits (126), Expect = 4e-21
Identities = 171/243 (70%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349
|| ||| | ||| | || || || || ||||| ||||| | || |||||||| || |
Sbjct 8835029 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 8835088
Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409
||||| ||| |||| | | || ||| | ||| | |||| || || || || ||
Sbjct 8835089 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTGTTATCGCATTCATTGCTGCTCCT 8835148
Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469
|| |||||||| ||||| || ||||| || ||||| || || | | ||||||||||||
Sbjct 8835149 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 8835208
Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529
|||||||| || || | |||| | || || || || |||| ||||| ||||||
Sbjct 8835209 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 8835268
Query 19530 TGG 19532
|||
Sbjct 8835269 TGG 8835271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 144440406190176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |