Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq696 491 7e-134
seq74 199 6e-46
seq2 91.5 2e-13
>seq696
Length=154923
Score = 491 bits (544), Expect = 7e-134
Identities = 679/945 (72%), Gaps = 4/945 (0%)
Strand=Plus/Minus
Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668
|||| |||||||||||| | |||||||| | ||| | | | ||||| | |||||
Sbjct 1330 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATT 1272
Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728
| |||||||| || || ||||| || ||||| || || || |||||||| || ||||
Sbjct 1271 ATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 1212
Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788
|| | | || || ||||| || || || ||||| || |||| |||| || ||
Sbjct 1211 TCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATT 1152
Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848
||||| || || || || ||||||||||| ||| | ||||||| ||||| ||||| |||
Sbjct 1151 GGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGT 1092
Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908
|||||||| | | | | | ||||| | | || | | || ||||| |
Sbjct 1091 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 1032
Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968
||||||||||| | |||| | ||||||||||||||||| ||||| ||||||||
Sbjct 1031 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCGGTTGCATATTCAGCT 972
Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028
||||| |||| || ||||| ||| | | || ||| | |||||||| || ||
Sbjct 971 CCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCT 912
Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088
|| ||||||||| |||| || || || || |||||||| ||| | |||||||| || ||
Sbjct 911 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 852
Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148
|| ||||| |||||||||||||| || ||| |||||| || ||| | ||||| || |
Sbjct 851 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 792
Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208
| || ||||||||| ||||| | || || ||| | ||| | |||||||| |
Sbjct 791 CTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 732
Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268
|| || || | ||||||| ||||| ||||||||||| || || ||||| ||
Sbjct 731 AATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTA 672
Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328
||||| || || || || || || | |||||||| ||||| |||||||| |
Sbjct 671 GCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT 612
Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388
|||||| |||||| | || | ||||| || | || | ||||| || || | |||
Sbjct 611 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 552
Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448
|| | || ||||| |||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 551 ATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAG- 493
Query 212449 TCAGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507
||| | | | ||| || |||||||| |||| || ||||| | || ||||||||||||||
Sbjct 492 TCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 433
Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552
||||||||| ||| | ||||| ||||||||||| || ||| ||||
Sbjct 432 AGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 388
>seq74
Length=21493
Score = 199 bits (220), Expect = 6e-46
Identities = 240/326 (74%), Gaps = 9/326 (3%)
Strand=Plus/Minus
Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286
||||||| ||||| ||||||||| | || || ||||| || ||||| ||||| || ||
Sbjct 11003 GGTTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTT 10944
Query 212287 GGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTC 212346
|| || | ||||||| || |||||||| | |||||| |||||| |
Sbjct 10943 GGCCGATTGATCTTCC-GT--------TTCAACAATTCTCGTTCTTTACATTTCTTCTTA 10893
Query 212347 GCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 212406
|| | ||||| || | || | ||||| || || | ||||| |||| ||||| |||
Sbjct 10892 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTC 10833
Query 212407 AACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCT 212466
||||||||||| ||||| |||||||||||||| |||||| ||| ||| || |
Sbjct 10832 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAAT 10773
Query 212467 ACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526
||||||| |||| || ||||| | | ||| ||||||||||||||||||| ||| | |||
Sbjct 10772 ACTTGGGCTGATATTATTAACCGTACTAACTTTGGTATGGAAGTTATGCATGAACGTAAT 10713
Query 212527 GCACACAACTTCCCACTTGACTTAGC 212552
|| ||||||||||| || ||| ||||
Sbjct 10712 GCTCACAACTTCCCTCTAGACCTAGC 10687
>seq2
Length=19320864
Score = 91.5 bits (100), Expect = 2e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668
|||| |||||||||||| | |||||||| | ||| | | | ||||| | ||| |
Sbjct 8835069 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTGTT 8835127
Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728
| |||||||| || || ||||| || ||||| || || || |||||||| || ||||
Sbjct 8835128 ATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 8835187
Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788
|| | | || || ||||| || || || ||||| || |||| |||| || ||
Sbjct 8835188 TCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATT 8835247
Query 211789 GGTTTACACTTCTATCCTATCTGG 211812
||||| || || || || ||||||
Sbjct 8835248 GGTTTGCATTTTTACCCGATCTGG 8835271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807548174269760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |