Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq7 241 2e-58 seq5 158 2e-33 seq4 86.0 8e-12 >seq7 Length=24649197 Score = 241 bits (266), Expect = 2e-58 Identities = 618/922 (67%), Gaps = 33/922 (4%) Strand=Plus/Plus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| || || ||||| || | || || ||||| |||||||| |||| | || || Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 |||||| ||||||| ||||| | ||| ||| | || | | || | ||| | Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 || ||||| || || || || || || |||||| |||| |||||| || | | Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAA 21840239 Query 33192 TTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 33249 | ||||| || |||| || ||| ||| ||||| |||||||| | Sbjct 21840240 GGCACAAGGAAGCGCATCGCA--AACAAACTCTCTCTCAATCTCAACCGCATCACAAACT 21840297 Query 33250 ATAGATCT--AACGGT-TTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACAT 33306 || ||| | |||| | ||| ||| | | | | || || | || | |||||||| Sbjct 21840298 ATCGATTTCAAACGTTCTTCATCAAGCT-TAGTTCTAAGAA--GACTATAGATCAAACAA 21840354 Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 |||||||| ||||| ||||| |||||||| ||| | |||||| || || |||||||| Sbjct 21840355 GCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCA 21840414 Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGAAAAGAAGAT 33425 ||||||| || || || || | ||| ||||| ||| | || | | ||||| ||||| || Sbjct 21840415 GGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATAT 21840473 Query 33426 TCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT--A 33481 ||||| || |||||| || | | |||||| | | || || || || | Sbjct 21840474 ACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAGATCCGTTGA 21840529 Query 33482 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33541 |||| || |||||| || || || || | |||||||| || ||||| || || || Sbjct 21840530 TCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAA 21840589 Query 33542 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33601 |||||| | | | || || | ||||| | ||||| |||| | ||||||||||| | Sbjct 21840590 AGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCT 21840649 Query 33602 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33661 | |||||||| || || || || || || ||||||||||| | ||| || | |||| Sbjct 21840650 CAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCT 21840709 Query 33662 GTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 | || || | ||| ||||| || | ||| || || |||||||| || ||| Sbjct 21840710 GAACATC-GGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCA 21840768 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGG--TGTTAGTTTATTCCA 33776 || || || | || ||||| || || | |||||| ||| || ||||| | ||| Sbjct 21840769 AAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTT-TCCCA 21840827 Query 33777 ATC---ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833 || |||| |||| ||| | ||| |||||||| | ||||| || || || || || Sbjct 21840828 GTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGC 21840884 Query 33834 CTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGG 33893 || || ||||| | |||||| | |||||||||||||| ||| |||| || ||| Sbjct 21840885 TTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGG 21840944 Query 33894 ATTTGGTGCAAGGATGGGTTCC 33915 |||||| ||||| |||||| Sbjct 21840945 TGTTGGTGTTAGGATTGGTTCC 21840966 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | || | ||| || | ||| | || | || |||||||| ||| || Sbjct 506604 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATGCC 506545 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| ||||||||||| || || |||||| | ||||| || || |||||| Sbjct 506544 ATTAGATGCTCCATTGGTACCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGA 506485 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || ||||| ||| ||| || | || || ||| || |||||||| || Sbjct 506484 AACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATAT 506425 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 ||||| ||||||||||| ||||| | ||||| ||||| Sbjct 506424 CCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 506383 >seq5 Length=21221946 Score = 158 bits (174), Expect = 2e-33 Identities = 287/414 (69%), Gaps = 7/414 (2%) Strand=Plus/Plus Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552 ||||| | || ||||| || ||||| |||||||| |||||| |||||||| | | Sbjct 3397430 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 3397489 Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 | || || ||||||| | ||||||||||| | ||||||||||| ||||| || || Sbjct 3397490 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATA 3397549 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672 |||||||| || ||||| || ||||||||| | ||||| | | || || || | | Sbjct 3397550 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 3397608 Query 33673 CA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731 || ||||| || | ||| || || ||||||||| || || || || || | Sbjct 3397609 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGAAGAAAGCGAG 3397668 Query 33732 TACATGTTTTATAAA---ATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGATAT 33787 |||||||| || || | || |||| | | | | |||| | ||| || | | | Sbjct 3397669 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCCAGTCGCGGTTGT 3397727 Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847 | | |||| |||||||||||| | ||||| || ||||| || || ||||| ||||| | Sbjct 3397728 CCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTTTTGTACATTT 3397787 Query 33848 TCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTG 33901 |||||| | || || |||||||| ||| ||||| | ||| |||||| Sbjct 3397788 CCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGGGGTTGGTG 3397841 Score = 109 bits (120), Expect = 7e-19 Identities = 285/428 (67%), Gaps = 10/428 (2%) Strand=Plus/Plus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| || || ||||| |||||||| || ||||||||||||||||||| | || ||| Sbjct 3396756 TTTCTGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAG 3396815 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 |||||| ||||||||||||| |||||| || | || | || | || | Sbjct 3396816 TTCCATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTACCCAAGCGCACCCAA 3396875 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA-TAA 33190 | |||||||| || || || ||||| |||||| |||| ||||| || | || Sbjct 3396876 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 3396935 Query 33191 GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 33248 || ||||| || |||| | ||| ||| || || ||||| || | Sbjct 3396936 CGCGCAC-GGAAGCGCGTCGCA--CACAAACTCTCTCTCGATTTCGACCGCGTCGCAGAC 3396992 Query 33249 AATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAACAT 33306 || || | ||| ||||||||| | | | | | || ||| || | | | || Sbjct 3396993 GATTGACTTCACGCGTTCTTCACTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCAA 3397050 Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 |||||||||||||| || || ||||| | || | |||||||||||| || ||||| Sbjct 3397051 GCGAAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCA 3397110 Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATT 33426 ||||| || || || || || ||||| || || ||| || ||| || |||||||| Sbjct 3397111 GGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATA 3397170 Query 33427 CCTTCTAC 33434 ||||| || Sbjct 3397171 CCTTCAAC 3397178 >seq4 Length=23328337 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | || | ||| || | ||| | || | || ||| |||| |||||| Sbjct 502017 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATAGGAACAATACC 501958 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || || ||||||||| | ||||| |||||| || || Sbjct 501957 ATTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGA 501898 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || || || || ||| || | || ||| ||| | || || || || Sbjct 501897 AACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAAT 501838 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 ||||| ||||||||||| ||||| | |||||| ||||| Sbjct 501837 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 501796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622941780359360