Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq7 241 2e-58
seq5 158 2e-33
seq4 86.0 8e-12
>seq7
Length=24649197
Score = 241 bits (266), Expect = 2e-58
Identities = 618/922 (67%), Gaps = 33/922 (4%)
Strand=Plus/Plus
Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071
||| || || ||||| || | || || ||||| |||||||| |||| | || ||
Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119
Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131
|||||| ||||||| ||||| | ||| ||| | || | | || | ||| |
Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179
Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191
|| ||||| || || || || || || |||||| |||| |||||| || | |
Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAA 21840239
Query 33192 TTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 33249
| ||||| || |||| || ||| ||| ||||| |||||||| |
Sbjct 21840240 GGCACAAGGAAGCGCATCGCA--AACAAACTCTCTCTCAATCTCAACCGCATCACAAACT 21840297
Query 33250 ATAGATCT--AACGGT-TTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACAT 33306
|| ||| | |||| | ||| ||| | | | | || || | || | ||||||||
Sbjct 21840298 ATCGATTTCAAACGTTCTTCATCAAGCT-TAGTTCTAAGAA--GACTATAGATCAAACAA 21840354
Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366
|||||||| ||||| ||||| |||||||| ||| | |||||| || || ||||||||
Sbjct 21840355 GCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCA 21840414
Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGAAAAGAAGAT 33425
||||||| || || || || | ||| ||||| ||| | || | | ||||| ||||| ||
Sbjct 21840415 GGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCAGAGAAGAATAT 21840473
Query 33426 TCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT--A 33481
||||| || |||||| || | | |||||| | | || || || || |
Sbjct 21840474 ACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAA----GCTTTGAGATCCGTTGA 21840529
Query 33482 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33541
|||| || |||||| || || || || | |||||||| || ||||| || || ||
Sbjct 21840530 TCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAA 21840589
Query 33542 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33601
|||||| | | | || || | ||||| | ||||| |||| | ||||||||||| |
Sbjct 21840590 AGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCT 21840649
Query 33602 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33661
| |||||||| || || || || || || ||||||||||| | ||| || | ||||
Sbjct 21840650 CAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCT 21840709
Query 33662 GTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720
| || || | ||| ||||| || | ||| || || |||||||| || |||
Sbjct 21840710 GAACATC-GGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCA 21840768
Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGG--TGTTAGTTTATTCCA 33776
|| || || | || ||||| || || | |||||| ||| || ||||| | |||
Sbjct 21840769 AAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTT-TCCCA 21840827
Query 33777 ATC---ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833
|| |||| |||| ||| | ||| |||||||| | ||||| || || || || ||
Sbjct 21840828 GTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGC 21840884
Query 33834 CTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGG 33893
|| || ||||| | |||||| | |||||||||||||| ||| |||| || |||
Sbjct 21840885 TTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGG 21840944
Query 33894 ATTTGGTGCAAGGATGGGTTCC 33915
|||||| ||||| ||||||
Sbjct 21840945 TGTTGGTGTTAGGATTGGTTCC 21840966
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
|||||| || || | || | ||| || | ||| | || | || |||||||| ||| ||
Sbjct 506604 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATGCC 506545
Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490
|| ||| ||||||||||| || || |||||| | ||||| || || ||||||
Sbjct 506544 ATTAGATGCTCCATTGGTACCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGA 506485
Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550
| ||| || ||||| ||| ||| || | || || ||| || |||||||| ||
Sbjct 506484 AACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATAT 506425
Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592
||||| ||||||||||| ||||| | ||||| |||||
Sbjct 506424 CCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 506383
>seq5
Length=21221946
Score = 158 bits (174), Expect = 2e-33
Identities = 287/414 (69%), Gaps = 7/414 (2%)
Strand=Plus/Plus
Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552
||||| | || ||||| || ||||| |||||||| |||||| |||||||| | |
Sbjct 3397430 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 3397489
Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612
| || || ||||||| | ||||||||||| | ||||||||||| ||||| || ||
Sbjct 3397490 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATA 3397549
Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672
|||||||| || ||||| || ||||||||| | ||||| | | || || || | |
Sbjct 3397550 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 3397608
Query 33673 CA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731
|| ||||| || | ||| || || ||||||||| || || || || || |
Sbjct 3397609 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGAAGAAAGCGAG 3397668
Query 33732 TACATGTTTTATAAA---ATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGATAT 33787
|||||||| || || | || |||| | | | | |||| | ||| || | | |
Sbjct 3397669 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTT-TCCCAGTCGCGGTTGT 3397727
Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847
| | |||| |||||||||||| | ||||| || ||||| || || ||||| ||||| |
Sbjct 3397728 CCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTTTTGTACATTT 3397787
Query 33848 TCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTG 33901
|||||| | || || |||||||| ||| ||||| | ||| ||||||
Sbjct 3397788 CCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGGGGTTGGTG 3397841
Score = 109 bits (120), Expect = 7e-19
Identities = 285/428 (67%), Gaps = 10/428 (2%)
Strand=Plus/Plus
Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071
||| || || ||||| |||||||| || ||||||||||||||||||| | || |||
Sbjct 3396756 TTTCTGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAG 3396815
Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131
|||||| ||||||||||||| |||||| || | || | || | || |
Sbjct 3396816 TTCCATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTACCCAAGCGCACCCAA 3396875
Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA-TAA 33190
| |||||||| || || || ||||| |||||| |||| ||||| || | ||
Sbjct 3396876 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 3396935
Query 33191 GTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 33248
|| ||||| || |||| | ||| ||| || || ||||| || |
Sbjct 3396936 CGCGCAC-GGAAGCGCGTCGCA--CACAAACTCTCTCTCGATTTCGACCGCGTCGCAGAC 3396992
Query 33249 AATAGATCTAACGGTTTCTTCACTCGG--TGGATGCAATAAATGTTTAAACATCAAACAT 33306
|| || | ||| ||||||||| | | | | | || ||| || | | | ||
Sbjct 3396993 GATTGACTTCACGCGTTCTTCACTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCAA 3397050
Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366
|||||||||||||| || || ||||| | || | |||||||||||| || |||||
Sbjct 3397051 GCGAAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCA 3397110
Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATT 33426
||||| || || || || || ||||| || || ||| || ||| || ||||||||
Sbjct 3397111 GGCATGAGTCCTCGTTTCTTTAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGATA 3397170
Query 33427 CCTTCTAC 33434
||||| ||
Sbjct 3397171 CCTTCAAC 3397178
>seq4
Length=23328337
Score = 86.0 bits (94), Expect = 8e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430
|||||| || || | || | ||| || | ||| | || | || ||| |||| ||||||
Sbjct 502017 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATAGGAACAATACC 501958
Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490
|| ||| | ||||| || || || ||||||||| | ||||| |||||| || ||
Sbjct 501957 ATTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGA 501898
Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550
| ||| || || || || ||| || | || ||| ||| | || || || ||
Sbjct 501897 AACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAAT 501838
Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592
||||| ||||||||||| ||||| | |||||| |||||
Sbjct 501837 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 501796
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622941780359360
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