Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1 105 6e-18 seq6 95.1 1e-14 seq4 89.7 5e-13 seq5 86.0 6e-12 >seq1 Length=33132539 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26763 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA 26822 || |||||||| | || || ||||| |||| || || | || ||| | || | ||| Sbjct 10396892 AAGAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAA 10396951 Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882 ||| ||||| ||||| | || ||| |||||| ||||||||||| || || || Sbjct 10396952 TCATCAGACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAAGAAGGAATCCCACCG 10397011 Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942 ||||| ||| | | || | || ||| |||||| | ||||||| |||| || || Sbjct 10397012 GATCAGCAACGGTTAATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACTCGCTGAT 10397071 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || |||||||| ||||| || || | ||| |||| || | || |||||||| Sbjct 10397072 TACAACATTCAGAAAGAGTCGACGCTTCATTTGGTGCTTCGTCTGAGAGGAGG 10397124 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || ||| ||||| ||||| ||||| || ||||| |||||| Sbjct 29080674 GACACCATTGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 29080733 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || ||||| || | || || ||||| ||||| |||| | ||| || || || || || Sbjct 29080734 CAGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGAA-CGCTTGCAGATTACAA 29080792 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| ||||||||||| ||| ||||||| || || | || ||||| || Sbjct 29080793 CATCCAAAAAGAATCAACTCTCCATCTCGTGCTTCGTCTGAGAGGTGG 29080840 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | || || ||||| |||||||||||||| || || || ||| Sbjct 29080902 GACACAATCGATAACGTGAAGGCCAAGATACAAGACAAAGAAGGGATCCCACCAGACCAA 29080961 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || |||||||| | | ||||| ||||||||||||| | | | | || || ||| Sbjct 29080962 CAGAGACTCATCTTTGCAGGCAAGCAACTCGAAGATGGTCGCACTCTTGCTGATTACAAC 29081021 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 || || ||||| || || ||||||| || |||||||| Sbjct 29081022 ATCCAGAAAGAGTCGACCCTCCATCTCGTGCTGAGACT 29081059 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 |||||| |||||||||||||| || || || ||||| |||||||| | | ||||| Sbjct 29081154 AAGATTCAGGACAAAGAAGGGATCCCACCAGACCAACAGAGACTCATCTTTGCAGGCAAG 29081213 Query 26913 CAACTCGAAGATGATAG-AAACG-TC-AGC-GACTATAACATTCAAAAAGAATCTACTAT 26968 ||||||||||||| | | | || || || || || ||||| || || || || || | Sbjct 29081214 CAACTCGAAGATGGTCGCACTCGATCTTGCTGATTACAACATCCAGAAGGAGTCAACCCT 29081273 Query 26969 CCATCTGGTCCTGAGACT 26986 |||||| || |||||||| Sbjct 29081274 CCATCTCGTGCTGAGACT 29081291 >seq6 Length=25113588 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| |||||| | ||||| || | ||||| |||| | || Sbjct 906102 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 906043 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||||| ||||| ||||| || ||||| || || Sbjct 906042 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCAG 905983 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | || ||| ||||| || ||||||| | | | | | | ||| || || Sbjct 905982 CAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGTCGTACCTTGACCGATTACAAT 905923 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || |||||||| || |||| |||| || Sbjct 905922 ATCCAGAAAGAATCAACCCTCCACTTGGTTCT 905891 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || ||| | || ||||| | |||||| |||| | ||| Sbjct 22900209 ATGCAGATCTTTGTTAAGACACTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGCTCT 22900268 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||| ||||| ||||| || ||||| ||||| Sbjct 22900269 GACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 22900328 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||||| || |||| || ||| ||||| || ||||||| | |||| || || || || Sbjct 22900329 CAAAGGCTTATTTTCGCCGGAAAACAGCTAGAAGATGGCCG-CACGTTGGCTGATTACAA 22900387 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 || || || ||||| || |||| |||| || || || Sbjct 22900388 TATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGGCT 22900426 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || || |||||||| | ||||| | || | || Sbjct 22758795 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 22758736 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| ||||| |||||||| || || ||||| || || Sbjct 22758735 GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATCCCTCCGGACCAG 22758676 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || ||| | || | | ||| |||||||| ||||||| || ||| | || ||||| || Sbjct 22758675 CAGAGATTGATCTTTGCCGGGAAACAACTTGAAGATGGCAG-AACTTTGGCTGACTACAA 22758617 Query 26948 CATTCAAAAAGAATCTAC 26965 |||||| || || ||||| Sbjct 22758616 CATTCAGAAGGAGTCTAC 22758599 >seq4 Length=23328337 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| |||||| | ||||| || | ||||| |||| | || Sbjct 15772023 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 15771964 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||||| ||||| ||||| || ||||| || || Sbjct 15771963 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCAG 15771904 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | || ||| ||||| || ||||||| | | | | | ||| || || Sbjct 15771903 CAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGTCGTACCTTGGCCGATTACAAT 15771844 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || |||||||| || |||| |||| || Sbjct 15771843 ATCCAGAAAGAATCAACCCTCCACTTGGTTCT 15771812 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||| || || || || ||||||||||| || |||| | || || ||| | ||| Sbjct 16908199 GACAAAGAGGGTATTCCACCTGATCAACAAAGGCTGATTTTTGCTGGTAAGCAATTGGAA 16908258 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| | | | | ||| || ||||| || ||||| |||||| | ||||||||| || Sbjct 16908259 GATGGCCGGACCTTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTCTTG 16908318 Query 26982 AGACTTAGAGGAGGAA 26997 || || ||||| |||| Sbjct 16908319 AGGCTCAGAGGTGGAA 16908334 >seq5 Length=21221946 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | || ||| | || | ||||| Sbjct 20742970 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCG 20743029 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | || ||| ||||| ||||| ||||| || || || || Sbjct 20743030 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGAC 20743089 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || | |||| || ||| ||||| || ||||| | | | | || |||||| Sbjct 20743090 CAGCAGCGATTGATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACCCTCGCCGACTAC 20743149 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || | ||||||||||| Sbjct 20743150 AACATCCAGAAGGAGTCGACGCTTCATCTGGTCCT 20743184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478658235637120