Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq1 105 6e-18
seq6 95.1 1e-14
seq4 89.7 5e-13
seq5 86.0 6e-12
>seq1
Length=33132539
Score = 105 bits (116), Expect = 6e-18
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 26763 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA 26822
|| |||||||| | || || ||||| |||| || || | || ||| | || | |||
Sbjct 10396892 AAGAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAA 10396951
Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882
||| ||||| ||||| | || ||| |||||| ||||||||||| || || ||
Sbjct 10396952 TCATCAGACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAAGAAGGAATCCCACCG 10397011
Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942
||||| ||| | | || | || ||| |||||| | ||||||| |||| || ||
Sbjct 10397012 GATCAGCAACGGTTAATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACTCGCTGAT 10397071
Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| |||||||| ||||| || || | ||| |||| || | || ||||||||
Sbjct 10397072 TACAACATTCAGAAAGAGTCGACGCTTCATTTGGTGCTTCGTCTGAGAGGAGG 10397124
Score = 98.7 bits (108), Expect = 1e-15
Identities = 124/168 (74%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| || | || ||| ||||| ||||| ||||| || ||||| ||||||
Sbjct 29080674 GACACCATTGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAA 29080733
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947
|| ||||| || | || || ||||| ||||| |||| | ||| || || || || ||
Sbjct 29080734 CAGAGACTAATCTTCGCTGGTAAACAGCTCGAGGATGGTCGAA-CGCTTGCAGATTACAA 29080792
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||| ||||||||||| ||| ||||||| || || | || ||||| ||
Sbjct 29080793 CATCCAAAAAGAATCAACTCTCCATCTCGTGCTTCGTCTGAGAGGTGG 29080840
Score = 87.8 bits (96), Expect = 2e-12
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| ||||| | || || ||||| |||||||||||||| || || || |||
Sbjct 29080902 GACACAATCGATAACGTGAAGGCCAAGATACAAGACAAAGAAGGGATCCCACCAGACCAA 29080961
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| |||||||| | | ||||| ||||||||||||| | | | | || || |||
Sbjct 29080962 CAGAGACTCATCTTTGCAGGCAAGCAACTCGAAGATGGTCGCACTCTTGCTGATTACAAC 29081021
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986
|| || ||||| || || ||||||| || ||||||||
Sbjct 29081022 ATCCAGAAAGAGTCGACCCTCCATCTCGTGCTGAGACT 29081059
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/138 (75%), Gaps = 4/138 (3%)
Strand=Plus/Plus
Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912
|||||| |||||||||||||| || || || ||||| |||||||| | | |||||
Sbjct 29081154 AAGATTCAGGACAAAGAAGGGATCCCACCAGACCAACAGAGACTCATCTTTGCAGGCAAG 29081213
Query 26913 CAACTCGAAGATGATAG-AAACG-TC-AGC-GACTATAACATTCAAAAAGAATCTACTAT 26968
||||||||||||| | | | || || || || || ||||| || || || || || |
Sbjct 29081214 CAACTCGAAGATGGTCGCACTCGATCTTGCTGATTACAACATCCAGAAGGAGTCAACCCT 29081273
Query 26969 CCATCTGGTCCTGAGACT 26986
|||||| || ||||||||
Sbjct 29081274 CCATCTCGTGCTGAGACT 29081291
>seq6
Length=25113588
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | ||||| |||||| | ||||| || | ||||| |||| | ||
Sbjct 906102 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 906043
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | || || ||||||| ||||| ||||| || ||||| || ||
Sbjct 906042 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCAG 905983
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| ||| | || | || ||| ||||| || ||||||| | | | | | | ||| || ||
Sbjct 905982 CAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGTCGTACCTTGACCGATTACAAT 905923
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| || |||||||| || |||| |||| ||
Sbjct 905922 ATCCAGAAAGAATCAACCCTCCACTTGGTTCT 905891
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| || ||| | || ||||| | |||||| |||| | |||
Sbjct 22900209 ATGCAGATCTTTGTTAAGACACTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGCTCT 22900268
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | || || ||||| ||||| ||||| || ||||| |||||
Sbjct 22900269 GACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 22900328
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947
||||| || |||| || ||| ||||| || ||||||| | |||| || || || ||
Sbjct 22900329 CAAAGGCTTATTTTCGCCGGAAAACAGCTAGAAGATGGCCG-CACGTTGGCTGATTACAA 22900387
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986
|| || || ||||| || |||| |||| || || ||
Sbjct 22900388 TATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGGCT 22900426
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || || || || |||||||| | ||||| | || | ||
Sbjct 22758795 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACTATCACTTTGGAGGTGGAGAGCTCT 22758736
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | |||||| ||||| |||||||| || || ||||| || ||
Sbjct 22758735 GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATCCCTCCGGACCAG 22758676
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947
|| ||| | || | | ||| |||||||| ||||||| || ||| | || ||||| ||
Sbjct 22758675 CAGAGATTGATCTTTGCCGGGAAACAACTTGAAGATGGCAG-AACTTTGGCTGACTACAA 22758617
Query 26948 CATTCAAAAAGAATCTAC 26965
|||||| || || |||||
Sbjct 22758616 CATTCAGAAGGAGTCTAC 22758599
>seq4
Length=23328337
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | ||||| |||||| | ||||| || | ||||| |||| | ||
Sbjct 15772023 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 15771964
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | || || ||||||| ||||| ||||| || ||||| || ||
Sbjct 15771963 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCAG 15771904
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| ||| | || | || ||| ||||| || ||||||| | | | | | ||| || ||
Sbjct 15771903 CAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGTCGTACCTTGGCCGATTACAAT 15771844
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| || |||||||| || |||| |||| ||
Sbjct 15771843 ATCCAGAAAGAATCAACCCTCCACTTGGTTCT 15771812
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921
|||||||| || || || || ||||||||||| || |||| | || || ||| | |||
Sbjct 16908199 GACAAAGAGGGTATTCCACCTGATCAACAAAGGCTGATTTTTGCTGGTAAGCAATTGGAA 16908258
Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981
|||| | | | | ||| || ||||| || ||||| |||||| | ||||||||| ||
Sbjct 16908259 GATGGCCGGACCTTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTCTTG 16908318
Query 26982 AGACTTAGAGGAGGAA 26997
|| || ||||| ||||
Sbjct 16908319 AGGCTCAGAGGTGGAA 16908334
>seq5
Length=21221946
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| |||| || || | || ||| | || | |||||
Sbjct 20742970 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCG 20743029
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||||||||| | || ||| ||||| ||||| ||||| || || || ||
Sbjct 20743030 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGAC 20743089
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| || || | |||| || ||| ||||| || ||||| | | | | || ||||||
Sbjct 20743090 CAGCAGCGATTGATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACCCTCGCCGACTAC 20743149
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| || || || || || | |||||||||||
Sbjct 20743150 AACATCCAGAAGGAGTCGACGCTTCATCTGGTCCT 20743184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478658235637120
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