Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7 122 2e-22 seq3 96.9 9e-15 seq5 84.2 6e-11 >seq7 Length=24649197 Score = 122 bits (134), Expect = 2e-22 Identities = 349/525 (66%), Gaps = 25/525 (5%) Strand=Plus/Minus Query 22437 GAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA----TTCGCGGAAC 22492 ||| || ||||| ||||| |||||||||| ||| || | ||| ||||| || Sbjct 21840558 GAAAAAAGCAGAATGGGCTATGAAATGGATCAACG--GATC--TCAAAGCTTCGCTGAGA 21840503 Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAATC 22551 | | | || |||||| |||||||| || ||||| ||||| ||| |||||| | || Sbjct 21840502 GAATCGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGC-TTTTGTTCGATA 21840444 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||| | || ||||| | | ||||| || || || || || || || || ||| Sbjct 21840443 TTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCG 21840384 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 |||| || |||||||| ||||| || ||| || | ||| | || || | | Sbjct 21840383 AGAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTGATCTATAGTCTTCTTAGAACT--- 21840327 Query 22672 AAACTTCCATATGAA--AC---TGTACTTGATATTATTACAAATGCAGTTGAACTTGAAC 22726 || ||| ||||| || || | | |||| | | | ||| ||||| |||| Sbjct 21840326 AAGCTTG---ATGAAGAACGTTTGAAATCGATAGTTTGTGA--TGCGGTTGAGATTGAGA 21840272 Query 22727 GTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCA-TTGGTATCAATGCCGAATCAATG 22785 | ||| ||||||| ||| | || | | || ||||||| ||| || | ||| Sbjct 21840271 GAGAGTTTGTTTGCGATGCGCTTCCT-TGTGCCTTGGTTGGTATGAATCGTGAGTTGATG 21840213 Query 22786 AGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCAT 22845 ||| || ||| | |||||||| ||| | |||| | | | || || | || ||| Sbjct 21840212 AGTCAGTACATTGAGTTTGTTGCTGATAGGTTATTGACTGCGCTTGGGTGTGGTAAGGTG 21840153 Query 22846 TATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAAT 22905 ||| || |||||| ||||| ||||||||| | ||||| ||| |||| || || || Sbjct 21840152 TATGGTGTGAGTAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAAGGTAAAACTAAC 21840093 Query 22906 TTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || || || || ||||||||||| || || ||||| ||||||| Sbjct 21840092 TTTTTTGAGAAGAGAGTTGGTGAGTATCAGAAAGCTTCTGTTATG 21840048 Score = 104 bits (114), Expect = 6e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||||||||| || | ||||||| | || | |||||| |||| | Sbjct 506401 ATGAAGGATGATAGCATCGAGGGGATATATGACACATTGAAAGAGTGTGCTGTTATAAGC 506460 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || || || || |||||||| || || ||||| | |||||| | | | |||||||| Sbjct 506461 AAATCGGCTGGGGGCATTGGTGTTTCAATTCACAACATCCGTGCAACTGGA-AGTTACAT 506519 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || || ||| || ||||| | ||||| ||||| || || || | |||| Sbjct 506520 TCGTGGTACCAATGGAGCATCTAATGGCATTGTTCCAATGCTGCGGGTATTCAATGATAC 506579 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| | || || ||||| || ||||| ||| | ||||| Sbjct 506580 TGCTCGTTATGTTGACCAAGGAGGAGGCAAGAGAAAAGG 506618 Score = 102 bits (112), Expect = 2e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| ||||||||||| || || || || Sbjct 2728515 ATGGCACTTCCTCCATGCCA-CATGTTTGCACAGTTTTATGTTGCAGATGGAGAACTGTC 2728573 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || || ||||| ||||| || || |||||||| |||||| Sbjct 2728574 ATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGCGTACCGTTTAACATTGCATC 2728633 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||| | || ||||| ||| | ||||||| Sbjct 2728634 ATACTCCCTTCTTACATGCATTCTCGCTCA 2728663 >seq3 Length=24464547 Score = 96.9 bits (106), Expect = 9e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| ||||| || ||| || ||||| |||||||||||||| || || ||||| Sbjct 23281538 CAGTTCTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAGCGGATATG 23281479 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || |||||||| || ||||| ||||| ||| | || ||||||||| | | ||||| Sbjct 23281478 GGCCTTGGTGTGCCATTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGCTGGCTCAC 23281419 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 | |||| || ||||| || || || ||||| || ||||| ||||| |||| | Sbjct 23281418 GTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTTATTGGGGATGCTCATGTGTACAAA 23281359 Query 111882 A 111882 | Sbjct 23281358 A 23281358 >seq5 Length=21221946 Score = 84.2 bits (92), Expect = 6e-11 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 22783 ATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAG 22842 |||||| |||||| | |||||||| ||| | || || | | || || || | ||| Sbjct 3396911 ATGAGTCAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCGCTTGGGTACGGGAAG 3396852 Query 22843 CATTATAACGTCGTTA---ATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAG 22899 || || |||| |||| ||||| |||||||||||||| || ||| ||||||| Sbjct 3396851 GTGTA---CGGTGTTACAAATCCGTTTGATTGGATGGAACTTATCTCGCTTCAAGGAAAA 3396795 Query 22900 ACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 || ||||| || || ||| | |||||||| || || ||||| Sbjct 3396794 ACTAATTTTTTTGAGAAACGTGTTGGTGATTATCAGAAAGC 3396754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303341977344272