Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq7 122 2e-22
seq3 96.9 9e-15
seq5 84.2 6e-11
>seq7
Length=24649197
Score = 122 bits (134), Expect = 2e-22
Identities = 349/525 (66%), Gaps = 25/525 (5%)
Strand=Plus/Minus
Query 22437 GAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA----TTCGCGGAAC 22492
||| || ||||| ||||| |||||||||| ||| || | ||| ||||| ||
Sbjct 21840558 GAAAAAAGCAGAATGGGCTATGAAATGGATCAACG--GATC--TCAAAGCTTCGCTGAGA 21840503
Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAATC 22551
| | | || |||||| |||||||| || ||||| ||||| ||| |||||| | ||
Sbjct 21840502 GAATCGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGC-TTTTGTTCGATA 21840444
Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611
|| ||| | || ||||| | | ||||| || || || || || || || || |||
Sbjct 21840443 TTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCG 21840384
Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671
|||| || |||||||| ||||| || ||| || | ||| | || || | |
Sbjct 21840383 AGAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTGATCTATAGTCTTCTTAGAACT--- 21840327
Query 22672 AAACTTCCATATGAA--AC---TGTACTTGATATTATTACAAATGCAGTTGAACTTGAAC 22726
|| ||| ||||| || || | | |||| | | | ||| ||||| ||||
Sbjct 21840326 AAGCTTG---ATGAAGAACGTTTGAAATCGATAGTTTGTGA--TGCGGTTGAGATTGAGA 21840272
Query 22727 GTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCA-TTGGTATCAATGCCGAATCAATG 22785
| ||| ||||||| ||| | || | | || ||||||| ||| || | |||
Sbjct 21840271 GAGAGTTTGTTTGCGATGCGCTTCCT-TGTGCCTTGGTTGGTATGAATCGTGAGTTGATG 21840213
Query 22786 AGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCAT 22845
||| || ||| | |||||||| ||| | |||| | | | || || | || |||
Sbjct 21840212 AGTCAGTACATTGAGTTTGTTGCTGATAGGTTATTGACTGCGCTTGGGTGTGGTAAGGTG 21840153
Query 22846 TATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAAT 22905
||| || |||||| ||||| ||||||||| | ||||| ||| |||| || || ||
Sbjct 21840152 TATGGTGTGAGTAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAAGGTAAAACTAAC 21840093
Query 22906 TTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950
|| || || || ||||||||||| || || ||||| |||||||
Sbjct 21840092 TTTTTTGAGAAGAGAGTTGGTGAGTATCAGAAAGCTTCTGTTATG 21840048
Score = 104 bits (114), Expect = 6e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681
|||||||| ||| ||||||||| || | ||||||| | || | |||||| |||| |
Sbjct 506401 ATGAAGGATGATAGCATCGAGGGGATATATGACACATTGAAAGAGTGTGCTGTTATAAGC 506460
Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740
|| || || || |||||||| || || ||||| | |||||| | | | ||||||||
Sbjct 506461 AAATCGGCTGGGGGCATTGGTGTTTCAATTCACAACATCCGTGCAACTGGA-AGTTACAT 506519
Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800
||| || || ||| || ||||| | ||||| ||||| || || || | ||||
Sbjct 506520 TCGTGGTACCAATGGAGCATCTAATGGCATTGTTCCAATGCTGCGGGTATTCAATGATAC 506579
Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839
||| | || || ||||| || ||||| ||| | |||||
Sbjct 506580 TGCTCGTTATGTTGACCAAGGAGGAGGCAAGAGAAAAGG 506618
Score = 102 bits (112), Expect = 2e-16
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730
||||||||||| ||||| || | | | ||| ||||||||||| || || || ||
Sbjct 2728515 ATGGCACTTCCTCCATGCCA-CATGTTTGCACAGTTTTATGTTGCAGATGGAGAACTGTC 2728573
Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790
||| |||||||||||||| || || ||||| ||||| || || |||||||| ||||||
Sbjct 2728574 ATGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGCGTACCGTTTAACATTGCATC 2728633
Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820
||| | || ||||| ||| | |||||||
Sbjct 2728634 ATACTCCCTTCTTACATGCATTCTCGCTCA 2728663
>seq3
Length=24464547
Score = 96.9 bits (106), Expect = 9e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761
||||| ||||| || ||| || ||||| |||||||||||||| || || |||||
Sbjct 23281538 CAGTTCTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAGCGGATATG 23281479
Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821
|| |||||||| || ||||| ||||| ||| | || ||||||||| | | |||||
Sbjct 23281478 GGCCTTGGTGTGCCATTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGCTGGCTCAC 23281419
Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881
| |||| || ||||| || || || ||||| || ||||| ||||| |||| |
Sbjct 23281418 GTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTTATTGGGGATGCTCATGTGTACAAA 23281359
Query 111882 A 111882
|
Sbjct 23281358 A 23281358
>seq5
Length=21221946
Score = 84.2 bits (92), Expect = 6e-11
Identities = 116/161 (72%), Gaps = 6/161 (4%)
Strand=Plus/Minus
Query 22783 ATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAG 22842
|||||| |||||| | |||||||| ||| | || || | | || || || | |||
Sbjct 3396911 ATGAGTCAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCGCTTGGGTACGGGAAG 3396852
Query 22843 CATTATAACGTCGTTA---ATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAG 22899
|| || |||| |||| ||||| |||||||||||||| || ||| |||||||
Sbjct 3396851 GTGTA---CGGTGTTACAAATCCGTTTGATTGGATGGAACTTATCTCGCTTCAAGGAAAA 3396795
Query 22900 ACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940
|| ||||| || || ||| | |||||||| || || |||||
Sbjct 3396794 ACTAATTTTTTTGAGAAACGTGTTGGTGATTATCAGAAAGC 3396754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303341977344272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |