Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 3e-15 seq4 93.3 4e-14 seq2 84.2 2e-11 seq7 82.4 6e-11 >seq6 Length=25113588 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| ||||| || || |||||||| |||| ||| | Sbjct 10621862 ATGCAAATTTTTGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 10621921 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || || ||| ||| || || ||||| | || | || || Sbjct 10621922 GACACCATT-GACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCTCTAGACCA 10621980 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | || | || || ||||| ||||||||| | || |||||||||| || Sbjct 10621981 GCAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACTTTGGCCGATTACAA 10622040 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| || ||||| || ||| | || |||| Sbjct 10622041 CATCCAGAAAGAATCAACTCTCCACTTGGT 10622070 >seq4 Length=23328337 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 |||||| ||||| || |||| ||| || || ||||| ||||||| | ||| | ||||| Sbjct 16908219 TGATCAACAAAGGCTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGGACCTTAGCCGA 16908278 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| ||||| || |||||||||||| | ||| |||| ||||| | |||| |||| Sbjct 16908279 TTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTCTTGAGGCTCAGAGGTGGAA 16908334 >seq2 Length=19320864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||| ||||| || || |||||||| |||| ||| | Sbjct 9127156 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 9127097 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || || ||| ||| ||||| ||||| | || ||| || Sbjct 9127096 GACACCATT-GACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCTGACCA 9127038 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||| | || | || || ||||| |||||||||| ||| |||| ||||| || Sbjct 9127037 GCAGAGATTGATCTTCGCTGGTAAACAGTTAGAAGATGGTCGTACCTTGGCAGATTACAA 9126978 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || || || || | ||| |||| | || || |||| || Sbjct 9126977 TATCCAGAAGGAATCAACACTCCATTTGGTTCTCAGGTTAAGAGGTGG 9126930 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||| ||||| || || |||||||| |||| ||| | Sbjct 9215937 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 9215878 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || || ||| ||| ||||| ||||| | || ||| || Sbjct 9215877 GACACCATT-GACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCTGACCA 9215819 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||| | || | || || ||||| |||||||||| ||| |||| ||||| || Sbjct 9215818 GCAGAGATTGATCTTCGCTGGTAAACAGTTAGAAGATGGTCGTACCTTGGCAGATTACAA 9215759 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || || || || | ||| |||| | || || |||| || Sbjct 9215758 TATCCAGAAGGAATCAACACTCCATTTGGTTCTCAGGTTAAGAGGTGG 9215711 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| || || ||||| ||||| |||||||| | || ||| | Sbjct 9126700 ATGCAGATTTTTGTGAAGACCCTCACTGGAAAGACCATTACTTTGGAGGTTGAGAGCTCA 9126641 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| ||| | || || ||| ||| || || ||||| |||| ||||| Sbjct 9126640 GACACTATTGATAATGTCAAGGCAAAGATTCAAGACAAGGAAGGTATCCCTCCGGATCAA 9126581 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||||| || | ||| || || || | || |||| || | || ||||| ||| Sbjct 9126580 CAGAGACTCATCTTTGCCGGTAAGCAGCTTGAGGATGGTCGTACTTTAGCTGATTACAAC 9126521 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 || |||||||||||||| | ||| ||||| Sbjct 9126520 ATCCAAAAAGAGTCTACCCTCCATTTGGTG 9126491 >seq7 Length=24649197 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| || || || ||||||||||| | ||| ||| | Sbjct 18993898 ATGCAGATATTTGTGAAAACTCTTACCGGTAAAACCATTACTCTAGAAGTTGAGAGCTCA 18993839 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || ||| || ||| || |||||||| |||| || || Sbjct 18993838 GACACCATT-GACAACGTGAAAGCTAAGATTCAAGACAAAGAAGGAATCCCTCCGGACCA 18993780 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || |||||||| | || ||||| ||| | || |||| ||| | || ||||| || Sbjct 18993779 ACAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGCACCCTTGCGGATTACAA 18993720 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||| ||||| ||||| || | || | |||||| Sbjct 18993719 CATCCAAAAGGAGTCAACACTCCACCTTGTGTTG 18993686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425340392019520