Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq6 96.9 3e-15
seq4 93.3 4e-14
seq2 84.2 2e-11
seq7 82.4 6e-11
>seq6
Length=25113588
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
|||||||||||||| ||||| ||||| || || |||||||| |||| ||| |
Sbjct 10621862 ATGCAAATTTTTGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 10621921
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| || ||||| || || ||| ||| || || ||||| | || | || ||
Sbjct 10621922 GACACCATT-GACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCTCTAGACCA 10621980
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||||||| | || | || || ||||| ||||||||| | || |||||||||| ||
Sbjct 10621981 GCAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACTTTGGCCGATTACAA 10622040
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494
||| || ||||| || ||| | || ||||
Sbjct 10622041 CATCCAGAAAGAATCAACTCTCCACTTGGT 10622070
>seq4
Length=23328337
Score = 93.3 bits (102), Expect = 4e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458
|||||| ||||| || |||| ||| || || ||||| ||||||| | ||| | |||||
Sbjct 16908219 TGATCAACAAAGGCTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGGACCTTAGCCGA 16908278
Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514
||| ||||| || |||||||||||| | ||| |||| ||||| | |||| ||||
Sbjct 16908279 TTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTCTTGAGGCTCAGAGGTGGAA 16908334
>seq2
Length=19320864
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||||||||| || ||||| ||||| || || |||||||| |||| ||| |
Sbjct 9127156 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 9127097
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| || ||||| || || ||| ||| ||||| ||||| | || ||| ||
Sbjct 9127096 GACACCATT-GACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCTGACCA 9127038
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| ||| | || | || || ||||| |||||||||| ||| |||| ||||| ||
Sbjct 9127037 GCAGAGATTGATCTTCGCTGGTAAACAGTTAGAAGATGGTCGTACCTTGGCAGATTACAA 9126978
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
|| || || || || || | ||| |||| | || || |||| ||
Sbjct 9126977 TATCCAGAAGGAATCAACACTCCATTTGGTTCTCAGGTTAAGAGGTGG 9126930
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||||||||| || ||||| ||||| || || |||||||| |||| ||| |
Sbjct 9215937 ATGCAAATTTTCGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 9215878
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| || ||||| || || ||| ||| ||||| ||||| | || ||| ||
Sbjct 9215877 GACACCATT-GACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCTGACCA 9215819
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| ||| | || | || || ||||| |||||||||| ||| |||| ||||| ||
Sbjct 9215818 GCAGAGATTGATCTTCGCTGGTAAACAGTTAGAAGATGGTCGTACCTTGGCAGATTACAA 9215759
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
|| || || || || || | ||| |||| | || || |||| ||
Sbjct 9215758 TATCCAGAAGGAATCAACACTCCATTTGGTTCTCAGGTTAAGAGGTGG 9215711
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| |||||||| || || ||||| ||||| |||||||| | || ||| |
Sbjct 9126700 ATGCAGATTTTTGTGAAGACCCTCACTGGAAAGACCATTACTTTGGAGGTTGAGAGCTCA 9126641
Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405
|||||| ||| | || || ||| ||| || || ||||| |||| |||||
Sbjct 9126640 GACACTATTGATAATGTCAAGGCAAAGATTCAAGACAAGGAAGGTATCCCTCCGGATCAA 9126581
Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465
|| ||||| || | ||| || || || | || |||| || | || ||||| |||
Sbjct 9126580 CAGAGACTCATCTTTGCCGGTAAGCAGCTTGAGGATGGTCGTACTTTAGCTGATTACAAC 9126521
Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495
|| |||||||||||||| | ||| |||||
Sbjct 9126520 ATCCAAAAAGAGTCTACCCTCCATTTGGTG 9126491
>seq7
Length=24649197
Score = 82.4 bits (90), Expect = 6e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| || ||||| ||||| || || || ||||||||||| | ||| ||| |
Sbjct 18993898 ATGCAGATATTTGTGAAAACTCTTACCGGTAAAACCATTACTCTAGAAGTTGAGAGCTCA 18993839
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| || ||||| || ||| || ||| || |||||||| |||| || ||
Sbjct 18993838 GACACCATT-GACAACGTGAAAGCTAAGATTCAAGACAAAGAAGGAATCCCTCCGGACCA 18993780
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
|| |||||||| | || ||||| ||| | || |||| ||| | || ||||| ||
Sbjct 18993779 ACAGAGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGTCGCACCCTTGCGGATTACAA 18993720
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498
||| ||||| ||||| || | || | ||||||
Sbjct 18993719 CATCCAAAAGGAGTCAACACTCCACCTTGTGTTG 18993686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425340392019520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |